8ZPY | pdb_00008zpy

Crystal structure of prefusion F of RSV

PDB DOI: https://doi.org/10.2210/pdb8ZPY/pdb

Classification: VIRAL PROTEIN
Organism(s): human respiratory syncytial virus, Enterobacteria phage T6
Expression System: Homo sapiens
Mutation(s): No

Deposited: 2024-05-31 Released: 2025-12-17
Deposition Author(s): Huang, Q., Lang, Q., Han, X., Yan, J.
Funding Organization(s): Other government

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.92 Å
R-Value Free:
0.255 (Depositor), 0.254 (DCC)
R-Value Work:
0.197 (Depositor), 0.197 (DCC)
R-Value Observed:
0.199 (Depositor)

Starting Model: integrative
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wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

prefusion F of RSV

Huang, Q., Lang, Q., Han, X., Yan, J.

To be published.

Macromolecule Content

Total Structure Weight: 343.87 kDa
Atom Count: 20,848
Modeled Residue Count: 2,702
Deposited Residue Count: 3,132
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Fusion glycoprotein F0,Fibritin	A, B, C, D, E A, B, C, D, E, F	522	human respiratory syncytial virus, Enterobacteria phage T6	Mutation(s): 0
UniProt
Find proteins for P12568 (Human respiratory syncytial virus) Explore P12568 Go to UniProtKB: P12568
Find proteins for A0A346FJN8 (Enterobacteria phage T6) Explore A0A346FJN8 Go to UniProtKB: A0A346FJN8
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Groups	P12568A0A346FJN8
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.92 Å
R-Value Free: 0.255 (Depositor), 0.254 (DCC)
R-Value Work: 0.197 (Depositor), 0.197 (DCC)
R-Value Observed: 0.199 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 159.329	α = 90
b = 168.674	β = 90
c = 189.568	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XDS	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2025-12-17

Deposition Author(s):

Funding Organization	Location	Grant Number
Other government	China	2022A-03-05

Revision History (Full details and data files)

Version 1.0: 2025-12-17
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.