8ZPY | pdb_00008zpy

Crystal structure of prefusion F of RSV

PDB DOI: https://doi.org/10.2210/pdb8ZPY/pdb

Classification: VIRAL PROTEIN
Organism(s): human respiratory syncytial virus, Enterobacteria phage T6
Expression System: Homo sapiens
Mutation(s): No

Deposited: 2024-05-31 Released: 2025-12-17
Deposition Author(s): Huang, Q., Lang, Q., Han, X., Yan, J.
Funding Organization(s): Other government

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.92 Å
R-Value Free:
0.255 (Depositor), 0.245 (DCC)
R-Value Work:
0.197 (Depositor)
R-Value Observed:
0.199 (Depositor)

Starting Model: in silico
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wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history.

Literature

prefusion F of RSV

Huang, Q., Lang, Q., Han, X., Yan, J.

To be published.

Macromolecule Content

Total Structure Weight: 343.87 kDa
Atom Count: 20,848
Modeled Residue Count: 2,702
Deposited Residue Count: 3,132
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Fusion glycoprotein F0,Fibritin	A, B, C, D, E A, B, C, D, E, F	522	human respiratory syncytial virus, Enterobacteria phage T6	Mutation(s): 0
UniProt
Find proteins for A0A346FJN8 (Enterobacteria phage T6) Explore A0A346FJN8 Go to UniProtKB: A0A346FJN8
Find proteins for P12568 (Human respiratory syncytial virus) Explore P12568 Go to UniProtKB: P12568
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Groups	P12568 A0A346FJN8
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.92 Å
R-Value Free: 0.255 (Depositor), 0.245 (DCC)
R-Value Work: 0.197 (Depositor)
R-Value Observed: 0.199 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 159.329	α = 90
b = 168.674	β = 90
c = 189.568	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XDS	data scaling
PHASER	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2025-12-17

Deposition Author(s):

Funding Organization	Location	Grant Number
Other government	China	2022A-03-05

Revision History (Full details and data files)

Version 1.0: 2025-12-17
Type: Initial release
Version 1.1: 2026-02-11
Changes: Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.