8ZMR

Vesamicol-bound VAChT

• PDB DOI: https://doi.org/10.2210/pdb8ZMR/pdb
• EM Map EMD-60254: EMDB EMDataResource

• Classification: TRANSPORT PROTEIN
• Organism(s): Escherichia coli K-12, Homo sapiens, synthetic construct
• Expression System: Homo sapiens
• Mutation(s): Yes 


• Deposited: 2024-05-23 Released: 2024-06-19 
• Deposition Author(s): Zhang, Z., Zhang, Y., Dai, F., Zhang, Y.X., Lee, C.-H.
• Funding Organization(s): National Science Foundation (NSF, China)

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.50 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Structural insights into VAChT neurotransmitter recognition and inhibition.

Zhang, Y., Dai, F., Chen, N., Zhou, D., Lee, C.H., Song, C., Zhang, Y., Zhang, Z.

(2024) Cell Res 

• PubMed: 38862671 
• DOI: https://doi.org/10.1038/s41422-024-00986-5
• Primary Citation of Related Structures:  
  8ZMR, 8ZMS

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Organizational Affiliation: 

State Key Laboratory of Membrane Biology, School of Life Sciences, Peking University, Beijing, China.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: electron microscopy

Macromolecule Content

• Total Structure Weight: 112.96 kDa 
• Atom Count: 2,916 
• Modelled Residue Count: 384 
• Deposited Residue Count: 1,047 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Maltose/maltodextrin-binding periplasmic protein,Vesicular acetylcholine transporter,DARPinoff7	A	1,047	Escherichia coli K-12, Homo sapiens, synthetic construct This entity is chimeric	Mutation(s): 1  Gene Names: malE, b4034, JW3994, SLC18A3, VACHT
UniProt & NIH Common Fund Data Resources
Find proteins for P0AEX9 (Escherichia coli (strain K12)) Explore P0AEX9  Go to UniProtKB:  P0AEX9
Find proteins for Q16572 (Homo sapiens) Explore Q16572  Go to UniProtKB:  Q16572
PHAROS:  Q16572 GTEx:  ENSG00000187714
UniProt Groups	Q16572P0AEX9

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
A1LWL	B [auth A]	vesamicol C17 H25 N O YSSBJODGIYRAMI-IRXDYDNUSA-N

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.50 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.21_5207:

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-06-19 
Deposition Author(s): Zhang, Z., Zhang, Y., Dai, F., Zhang, Y.X., Lee, C.-H.

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Funding Organization	Location	Grant Number
National Science Foundation (NSF, China)	China	--

Revision History  

• Version 1.0: 2024-06-19
  Type: Initial release