8ZH8

Human GPR103 -Gq complex bound to QRFP26


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.19 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Structure and dynamics of the pyroglutamylated RF-amide peptide QRFP receptor GPR103.

Iwama, A.Kise, R.Akasaka, H.Sano, F.K.Oshima, H.S.Inoue, A.Shihoya, W.Nureki, O.

(2024) Nat Commun 15: 4769-4769

  • DOI: https://doi.org/10.1038/s41467-024-49030-5
  • Primary Citation of Related Structures:  
    8ZH8

  • PubMed Abstract: 

    Pyroglutamylated RF-amide peptide (QRFP) is a peptide hormone with a C-terminal RF-amide motif. QRFP selectively activates a class A G-protein-coupled receptor (GPCR) GPR103 to exert various physiological functions such as energy metabolism and appetite regulation. Here, we report the cryo-electron microscopy structure of the QRFP26-GPR103-G q complex at 3.19 Å resolution. QRFP26 adopts an extended structure bearing no secondary structure, with its N-terminal and C-terminal sides recognized by extracellular and transmembrane domains of GPR103 respectively. This movement, reminiscent of class B1 GPCRs except for orientation and structure of the ligand, is critical for the high-affinity binding and receptor specificity of QRFP26. Mutagenesis experiments validate the functional importance of the binding mode of QRFP26 by GPR103. Structural comparisons with closely related receptors, including RY-amide peptide-recognizing GPCRs, revealed conserved and diversified peptide recognition mechanisms, providing profound insights into the biological significance of RF-amide peptides. Collectively, this study not only advances our understanding of GPCR-ligand interactions, but also paves the way for the development of novel therapeutics targeting metabolic and appetite disorders and emergency medical care.


  • Organizational Affiliation

    Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Bunkyo, Tokyo, 113-0033, Japan.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Pyroglutamylated RF-amide peptide receptorA [auth R]402Homo sapiensMutation(s): 0 
Gene Names: QRFPRGPR103
Membrane Entity: Yes 
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Find proteins for Q96P65 (Homo sapiens)
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Go to UniProtKB:  Q96P65
PHAROS:  Q96P65
GTEx:  ENSG00000186867 
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UniProt GroupQ96P65
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
nanobody Nb35B [auth N]137Lama glamaMutation(s): 0 
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1C [auth B]351Rattus norvegicusMutation(s): 0 
Gene Names: Gnb1
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2D [auth G]68Bos taurusMutation(s): 0 
Gene Names: GNG2
Membrane Entity: Yes 
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2,Guanine nucleotide-binding protein G(i) subunit alpha-2,Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLasE [auth A]326Homo sapiensMutation(s): 25 
Gene Names: GNG2GNAI2GNAI2BGNASGNAS1
Membrane Entity: Yes 
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GTEx:  ENSG00000114353 
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GTEx:  ENSG00000087460 
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GTEx:  ENSG00000186469 
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UniProt GroupsP04899P59768Q5JWF2
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
scFv16F [auth S]260Mus musculusMutation(s): 0 
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
QRF-amideG [auth Q]27Homo sapiensMutation(s): 1 
Membrane Entity: Yes 
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GTEx:  ENSG00000188710 
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.19 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Japan Society for the Promotion of Science (JSPS)Japan21H05037

Revision History  (Full details and data files)

  • Version 1.0: 2024-07-03
    Type: Initial release