8Z9U | pdb_00008z9u

Crystal structure of the Methermicoccus shengliensis ZC-1 2-methoxybenzoic acid methyltransferase (MtxA)

PDB DOI: https://doi.org/10.2210/pdb8Z9U/pdb

Classification: TRANSFERASE
Organism(s): Methermicoccus shengliensis DSM 18856
Expression System: Methanococcus maripaludis S2
Mutation(s): No

Deposited: 2024-04-23 Released: 2024-05-15
Deposition Author(s): Yang, Q., Wang, S.X., Bai, L.P.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.91 Å
R-Value Free:
0.233 (Depositor), 0.233 (DCC)
R-Value Work:
0.212 (Depositor), 0.212 (DCC)
R-Value Observed:
0.213 (Depositor)

Starting Model: in silico
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This is version 1.0 of the entry. See complete history.

Literature

Crystal structure of the Methermicoccus shengliensis ZC-1 2-methoxybenzoic acid methyltransferase (MtxA)

Yang, Q., Wang, S.X., Bai, L.P.

To be published.

Macromolecule Content

Total Structure Weight: 75.75 kDa
Atom Count: 4,628
Modeled Residue Count: 566
Deposited Residue Count: 688
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Tetrahydromethanopterin S-methyltransferase subunit H	A [auth B], B [auth A]	344	Methermicoccus shengliensis DSM 18856	Mutation(s): 0 Gene Names: mtrH, HA299_01740 EC: 2.1.1.86
UniProt
Find proteins for A0A832VZ83 (Methermicoccus shengliensis) Explore A0A832VZ83 Go to UniProtKB: A0A832VZ83
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A832VZ83
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.91 Å
R-Value Free: 0.233 (Depositor), 0.233 (DCC)
R-Value Work: 0.212 (Depositor), 0.212 (DCC)
R-Value Observed: 0.213 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 77.716	α = 90
b = 83.214	β = 90
c = 132.474	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
XDS	data scaling
PHENIX	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2024-05-15

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	--

Revision History (Full details and data files)

Version 1.0: 2024-05-15
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.