8Z7A | pdb_00008z7a

Open Barrel Structure of Translin from Trichoderma virens

PDB DOI: https://doi.org/10.2210/pdb8Z7A/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Trichoderma virens Gv29-8
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2024-04-19 Released: 2025-04-23
Deposition Author(s): Kumari, S., Gupta, G.D.
Funding Organization(s): Other government

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.20 Å
R-Value Free:
0.237 (Depositor), 0.240 (DCC)
R-Value Work:
0.213 (Depositor), 0.214 (DCC)
R-Value Observed:
0.214 (Depositor)

Starting Model: experimental
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This is version 1.0 of the entry. See complete history.

Literature

Open Barrel Structure of Translin from Trichoderma virens

Kumari, S., Gupta, G.D.

To be published.

Macromolecule Content

Total Structure Weight: 245 kDa
Atom Count: 14,312
Modeled Residue Count: 1,802
Deposited Residue Count: 2,208
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Translin	A, B, C, D, E A, B, C, D, E, F, G, H	276	Trichoderma virens Gv29-8	Mutation(s): 0 Gene Names: TRIVIDRAFT_72774
UniProt
Find proteins for G9MJL3 (Hypocrea virens (strain Gv29-8 / FGSC 10586)) Explore G9MJL3 Go to UniProtKB: G9MJL3
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G9MJL3
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.20 Å
R-Value Free: 0.237 (Depositor), 0.240 (DCC)
R-Value Work: 0.213 (Depositor), 0.214 (DCC)
R-Value Observed: 0.214 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 76.552	α = 90
b = 153.223	β = 111.47
c = 103.949	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
Aimless	data scaling
XDS	data reduction
PHASER	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2025-04-23

Deposition Author(s):

Funding Organization	Location	Grant Number
Other government	India	NA

Revision History (Full details and data files)

Version 1.0: 2025-04-23
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.