8Z6G | pdb_00008z6g

the AlgU-MucAcyto complex structure in Pseudomonas aeruginosa

PDB DOI: https://doi.org/10.2210/pdb8Z6G/pdb

Classification: TRANSCRIPTION
Organism(s): Pseudomonas aeruginosa
Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
Mutation(s): No

Deposited: 2024-04-19 Released: 2024-05-08
Deposition Author(s): Li, T., Wang, Y.Z., Bao, R.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free:
0.245 (Depositor), 0.247 (DCC)
R-Value Work:
0.221 (Depositor), 0.223 (DCC)
R-Value Observed:
0.243 (Depositor)

Starting Model: in silico
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This is version 1.0 of the entry. See complete history.

Literature

the AlgU-MucAcyto complex structure in Pseudomonas aeruginosa

Li, T., Wang, Y.Z., Bao, R.

To be published.

Macromolecule Content

Total Structure Weight: 99.27 kDa
Atom Count: 5,943
Modeled Residue Count: 720
Deposited Residue Count: 870
Unique protein chains: 2

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Anti sigma-E RseA, N-terminal domain protein	A, C, E	89	Pseudomonas aeruginosa	Mutation(s): 0 Gene Names: CSB93_6114, DY940_22820
UniProt
Find proteins for P38107 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)) Explore P38107 Go to UniProtKB: P38107
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P38107
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
RNA polymerase sigma factor	B, D, F	201	Pseudomonas aeruginosa	Mutation(s): 0 Gene Names: algU, rpoE, rpoE_2, ALP65_02762, CAZ10_12515, CSB93_6115, DT376_02630, DY940_22815, GNQ48_23050, GUL26_31990... algU, rpoE, rpoE_2, ALP65_02762, CAZ10_12515, CSB93_6115, DT376_02630, DY940_22815, GNQ48_23050, GUL26_31990, IPC1295_12635, IPC737_23130, PA52Ts2_1752, PAERUG_P19_London_7_VIM_2_05_10_02252
UniProt
Find proteins for Q06198 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)) Explore Q06198 Go to UniProtKB: Q06198
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q06198
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free: 0.245 (Depositor), 0.247 (DCC)
R-Value Work: 0.221 (Depositor), 0.223 (DCC)
R-Value Observed: 0.243 (Depositor)

Space Group: P 3₂

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 126.525	α = 90
b = 126.525	β = 90
c = 42.841	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
PHENIX	refinement
HKL-2000	data scaling
HKL-2000	data reduction
PHENIX	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2024-05-08

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	32360046

Revision History (Full details and data files)

Version 1.0: 2024-05-08
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.