8Z49 | pdb_00008z49

Solution Structure of DRB7.2 M, the dsRBD region of DRB7.2

PDB DOI: https://doi.org/10.2210/pdb8Z49/pdb

Classification: PLANT PROTEIN
Organism(s): Arabidopsis thaliana
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2024-04-17 Released: 2025-04-23
Deposition Author(s): Deshmukh, M.V., Paturi, S., Patra, D.
Funding Organization(s): Council of Scientific & Industrial Research (CSIR)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 10000
Conformers Submitted: 10
Selection Criteria: structures with the lowest energy

wwPDB Validation 3D Report Full Report

Validation slider image for 8Z49

This is version 1.0 of the entry. See complete history.

Literature

The mechanism of DRB7.2:DRB4 mediated sequestering of endogenous inverted-repeat dsRNA precursors in plants

Paturi, S., Patra, D., Behera, P.C., Aute, R., Waghela, N., Kinatukara, P., Deshmukh, M.V.

(2025) Elife

DOI: https://doi.org/10.7554/elife.105762.1

Macromolecule Content

Total Structure Weight: 11 kDa
Atom Count: 770
Modeled Residue Count: 97
Deposited Residue Count: 97
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Double-stranded RNA-binding domain (DsRBD)-containing protein	A	97	Arabidopsis thaliana	Mutation(s): 0 Gene Names: AT4G00420
UniProt
Find proteins for F4JHB3 (Arabidopsis thaliana) Explore F4JHB3 Go to UniProtKB: F4JHB3
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	F4JHB3
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 10000
Conformers Submitted: 10
Selection Criteria: structures with the lowest energy

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2025-04-23

Deposition Author(s):

Funding Organization	Location	Grant Number
Council of Scientific & Industrial Research (CSIR)	India	MLP0161

Revision History (Full details and data files)

Version 1.0: 2025-04-23
Type: Initial release

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.