8Z3T | pdb_00008z3t

Structure of P-98/N44

PDB DOI: https://doi.org/10.2210/pdb8Z3T/pdb

Classification: VIRAL PROTEIN
Organism(s): Human immunodeficiency virus 1
Mutation(s): Yes

Deposited: 2024-04-16 Released: 2025-10-22
Deposition Author(s): Liu, N., Qin, B.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.01 Å
R-Value Free:
0.316 (Depositor), 0.315 (DCC)
R-Value Work:
0.248 (Depositor), 0.251 (DCC)
R-Value Observed:
0.255 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.0 of the entry. See complete history.

Literature

Structure of P-98/N44

Liu, N., Qin, B.

To be published.

Macromolecule Content

Total Structure Weight: 25.72 kDa
Atom Count: 1,890
Modeled Residue Count: 215
Deposited Residue Count: 222
Unique protein chains: 2

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Env polyprotein	A, B, C	45	Human immunodeficiency virus 1	Mutation(s): 1
UniProt
Find proteins for A0A1V0G0J3 (Human immunodeficiency virus type 1) Explore A0A1V0G0J3 Go to UniProtKB: A0A1V0G0J3
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A1V0G0J3
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
P-98	D, E, F	29	Human immunodeficiency virus 1	Mutation(s): 0
UniProt
Find proteins for A0A2I6B8P1 (Human immunodeficiency virus type 1) Explore A0A2I6B8P1 Go to UniProtKB: A0A2I6B8P1
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A2I6B8P1
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.01 Å
R-Value Free: 0.316 (Depositor), 0.315 (DCC)
R-Value Work: 0.248 (Depositor), 0.251 (DCC)
R-Value Observed: 0.255 (Depositor)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 62.915	α = 90
b = 35.97	β = 92.75
c = 107.113	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XSCALE	data scaling
PHASER	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2025-10-22

Deposition Author(s):

Funding Organization	Location	Grant Number
Not funded		--

Revision History (Full details and data files)

Version 1.0: 2025-10-22
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.