8Z3B

Crystal structure of GSTd2

• PDB DOI: https://doi.org/10.2210/pdb8Z3B/pdb

• Classification: TRANSFERASE
• Organism(s): Plutella xylostella
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2024-04-15 Released: 2024-07-03 
• Deposition Author(s): Mo, X., Yao, Y.
• Funding Organization(s): National Natural Science Foundation of China (NSFC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.30 Å
• R-Value Free: 0.230 
• R-Value Work: 0.185 

Starting Model: experimental

Literature

Characterization of a Plutella xylostella GZTd2, evolved in isothiocyanate detoxification

Mo, X., Yao, Y.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 47.12 kDa 
• Atom Count: 3,582 
• Modelled Residue Count: 424 
• Deposited Residue Count: 424 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Glutathione S-transferase delta	A, B	212	Plutella xylostella	Mutation(s): 0  Gene Names: PxGSTd
UniProt
Find proteins for A0A8S4G4Y6 (Plutella xylostella) Explore A0A8S4G4Y6  Go to UniProtKB:  A0A8S4G4Y6

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.30 Å
• R-Value Free: 0.230 
• R-Value Work: 0.185 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 58.124	α = 90
b = 82.355	β = 90
c = 106.598	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-07-03 
Deposition Author(s): Mo, X., Yao, Y.

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Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	32071476

Revision History  

• Version 1.0: 2024-07-03
  Type: Initial release