8Z1Z | pdb_00008z1z

Experimental Data Snapshot

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Li, P., Huang, Y.

To be published.

Macromolecule Content

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Dipeptide transport system permease protein DppB	A	339	Escherichia coli K-12	Mutation(s): 0 Gene Names: dppB, b3543, JW3512
UniProt
Find proteins for P0AEF8 (Escherichia coli (strain K12)) Explore P0AEF8 Go to UniProtKB: P0AEF8
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P0AEF8
Sequence Annotations Expand
Reference Sequence

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| 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Dipeptide transport system permease protein DppC	B	300	Escherichia coli K-12	Mutation(s): 0 Gene Names: dppC, b3542, JW3511
UniProt
Find proteins for P0AEG1 (Escherichia coli (strain K12)) Explore P0AEG1 Go to UniProtKB: P0AEG1
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P0AEG1
Sequence Annotations Expand
Reference Sequence

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| 3D Structure

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Dipeptide transport ATP-binding protein DppD	C	327	Escherichia coli K-12	Mutation(s): 0 Gene Names: dppD, b3541, JW3510 EC: 7.4.2.9
UniProt
Find proteins for P0AAG0 (Escherichia coli (strain K12)) Explore P0AAG0 Go to UniProtKB: P0AAG0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P0AAG0
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Reference Sequence

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Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
Dipeptide transport ATP-binding protein DppF	D	334	Escherichia coli K-12	Mutation(s): 0 Gene Names: dppF, dppE, b3540, JW3509 EC: 7.4.2.9
UniProt
Find proteins for P37313 (Escherichia coli (strain K12)) Explore P37313 Go to UniProtKB: P37313
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P37313
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Reference Sequence

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| 3D Structure

Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
Dipeptide-binding protein	E [auth F]	535	Escherichia coli K-12	Mutation(s): 2 Gene Names: dppA, b3544, JW3513
UniProt
Find proteins for P23847 (Escherichia coli (strain K12)) Explore P23847 Go to UniProtKB: P23847
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P23847
Sequence Annotations Expand
Reference Sequence

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
AGS (Subject of Investigation/LOI) Query on AGS Download:Ideal Coordinates CCD File SDF format, chain I [auth D] SDF format, chain G [auth C] MOL2 format, chain I [auth D] MOL2 format, chain G [auth C] mmCIF format, chain I [auth D] mmCIF format, chain G [auth C]	G [auth C], I [auth D]	PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER C₁₀ H₁₆ N₅ O₁₂ P₃ S NLTUCYMLOPLUHL-KQYNXXCUSA-N		Interactions Focus chain G [auth C] Focus chain I [auth D] Interactions & Density Focus chain G [auth C] Focus chain I [auth D]
SF4 (Subject of Investigation/LOI) Query on SF4 Download:Ideal Coordinates CCD File SDF format, chain H [auth D] SDF format, chain F [auth C] MOL2 format, chain H [auth D] MOL2 format, chain F [auth C] mmCIF format, chain H [auth D] mmCIF format, chain F [auth C]	F [auth C], H [auth D]	IRON/SULFUR CLUSTER Fe₄ S₄ LJBDFODJNLIPKO-UHFFFAOYSA-N		Interactions Focus chain F [auth C] Focus chain H [auth D] Interactions & Density Focus chain F [auth C] Focus chain H [auth D]