8YR0 | pdb_00008yr0

Cryo-EM Structure of AdeG from Acinetobacter baumannii


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.06 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 8YR0

This is version 1.2 of the entry. See complete history

Literature

Cryo-EM structure and complementary drug efflux activity of the Acinetobacter baumannii multidrug efflux pump AdeG.

Ouyang, Z.He, W.Wu, D.An, H.Duan, L.Jiao, M.He, X.Yu, Q.Zhang, J.Qin, Q.Wang, R.Zheng, F.Hwang, P.M.Hua, X.Zhu, L.Wen, Y.

(2025) Structure 33: 539-551.e4

  • DOI: https://doi.org/10.1016/j.str.2024.12.009
  • Primary Citation Related Structures: 
    8YR0

  • PubMed Abstract: 

    Multidrug-resistant Acinetobacter baumannii has emerged as one of the most antibiotic-resistant bacterial pathogens associated with nosocomial infection, with its resistance highly depending on multiple multidrug efflux pumps. Here, we report the cryoelectron microscopy (cryo-EM) structure of Acinetobacter drug efflux G (AdeG), the inner membrane component of one of three important resistance-nodulation-cell division (RND) pump family members in A. baumannii, which is involved in drug resistance to chloramphenicol, trimethoprim, ciprofloxacin, and clindamycin. We systematically compare the structures and substrate binding specificities of AdeG, AdeB, and AdeJ multidrug efflux pumps via molecular docking, revealing potential determinants for drug binding. Knockout experiments demonstrate a functional complementarity between AdeABC, AdeFGH, and AdeIJK. Our study provides a structural understanding of A. baumannii multidrug efflux pump AdeG and reveals complementary drug efflux activity between AdeG and other RND efflux pumps, which may promote further rational drug discovery efforts targeting multidrug efflux pumps.


  • Organizational Affiliation
    • Center for Microbiome Research of Med-X Institute, Department of Critical Care Medicine, Shaanxi Provincial Key Laboratory of Sepsis in Critical Care Medicine, The First Affiliated Hospital, Xi'an Jiaotong University, Xi'an 710061, China.

Macromolecule Content 

  • Total Structure Weight: 338.94 kDa 
  • Atom Count: 23,128 
  • Modeled Residue Count: 3,084 
  • Deposited Residue Count: 3,114 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Cation/multidrug efflux pump
A, B, C
1,038Acinetobacter baumanniiMutation(s): 0 
Gene Names: bepENCTC13305_03603

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.06 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China82102402
National Natural Science Foundation of China (NSFC)China82072237
National Natural Science Foundation of China (NSFC)China32170187
National Natural Science Foundation of China (NSFC)China31600593

Revision History  (Full details and data files)

  • Version 1.0: 2025-01-01
    Type: Initial release
  • Version 1.1: 2025-07-23
    Changes: Data collection
  • Version 1.2: 2026-07-15
    Changes: Data collection, Database references