8YQA | pdb_00008yqa

Galectin-10 L27A

PDB DOI: https://doi.org/10.2210/pdb8YQA/pdb

Classification: SUGAR BINDING PROTEIN
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2024-03-19 Released: 2025-03-26
Deposition Author(s): Su, J.Y., Sun, Y.Q.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.17 Å
R-Value Free:
0.249 (Depositor), 0.249 (DCC)
R-Value Work:
0.206 (Depositor), 0.204 (DCC)
R-Value Observed:
0.210 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Galectin-10 L27A

Su, J.Y., Sun, Y.Q.

To be published.

Macromolecule Content

Total Structure Weight: 16.43 kDa
Atom Count: 1,182
Modelled Residue Count: 138
Deposited Residue Count: 142
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Galectin-10	A	142	Homo sapiens	Mutation(s): 1 Gene Names: CLC, LGALS10, LGALS10A
UniProt & NIH Common Fund Data Resources
Find proteins for Q05315 (Homo sapiens) Explore Q05315 Go to UniProtKB: Q05315
PHAROS: Q05315 GTEx: ENSG00000105205
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q05315
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.17 Å
R-Value Free: 0.249 (Depositor), 0.249 (DCC)
R-Value Work: 0.206 (Depositor), 0.204 (DCC)
R-Value Observed: 0.210 (Depositor)

Space Group: P 6₅ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 48.679	α = 90
b = 48.679	β = 90
c = 259.791	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2025-03-26

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	32171255

Revision History (Full details and data files)

Version 1.0: 2025-03-26
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.