8YMC | pdb_00008ymc

FtsEX in nanodisc


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 8YMC

This is version 1.2 of the entry. See complete history

Literature

Structural insights into the mechanotransducing mechanism of FtsEX in cell division.

Chen, Y.Guo, D.Wang, X.Zhang, C.Chen, Y.Luo, Q.Chen, Y.Yang, L.Zhang, Z.Hong, T.Zhang, Z.Dong, H.Chang, S.Hu, J.Tang, X.

(2024) MedComm (2020) 5: e688-e688

  • DOI: https://doi.org/10.1002/mco2.688
  • Primary Citation Related Structures: 
    8YMC

  • PubMed Abstract: 

    The filamentous temperature-sensitive (Fts) protein FtsEX plays a pivotal role in Escherichia coli ( E. coli ) cell division by facilitating the activation of peptidoglycan hydrolysis through the adaptor EnvC. FtsEX belongs to the type VII ATP-binding cassette (ABC) transporter superfamily, which harnesses ATP energy to induce mechanical force, triggering a cascade of conformational changes that activate the pathway. However, the precise mechanism by which FtsEX initiates mechanotransmission remains elusive. Due to the inherent instability of this type of ABC transporter protein in vitro, the conformation of FtsEX has solely been determined in the stabilized ATP-bound state. To elucidate the dynamics of FtsEX, we characterized FtsEX and EnvC of various functional structures through cryo-electron microscopy (cryo-EM) and homology modeling. We validated the structures by molecular dynamics simulations. By site-directed mutagenesis and phenotype screening, we also identified the functional residues involved in allosteric communication between FtsE and FtsX as well as FtsX and EnvC. Additionally, we discovered a potential role of phospholipids in stabilizing the complex conformation during mechanotransmission. This comprehensive exploration significantly enhances our understanding of the intricate mechanisms governing bacterial cell division and unveils potential molecular targets for developing innovative antimicrobial drugs to combat antibiotic resistance.


  • Organizational Affiliation
    • Department of Laboratory Medicine, State Key Laboratory of Biotherapy, National Clinical Research Center for Geriatrics, West China Hospital Sichuan University Chengdu China.

Macromolecule Content 

  • Total Structure Weight: 127.17 kDa 
  • Atom Count: 8,246 
  • Modeled Residue Count: 1,050 
  • Deposited Residue Count: 1,140 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Cell division ATP-binding protein FtsE
A, B
224Escherichia coli K-12Mutation(s): 1 
Gene Names: ftsEb3463JW3428
Membrane Entity: Yes 
UniProt
Find proteins for P0A9R7 (Escherichia coli (strain K12))
Explore P0A9R7 
Go to UniProtKB:  P0A9R7
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0A9R7
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Cell division protein FtsX
C, D
346Escherichia coli K-12Mutation(s): 0 
Gene Names: ftsXftsSb3462JW3427
Membrane Entity: Yes 
UniProt
Find proteins for P0AC30 (Escherichia coli (strain K12))
Explore P0AC30 
Go to UniProtKB:  P0AC30
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0AC30
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China32000844,31900039

Revision History  (Full details and data files)

  • Version 1.0: 2025-03-12
    Type: Initial release
  • Version 1.1: 2025-06-18
    Changes: Data collection
  • Version 1.2: 2026-03-25
    Changes: Data collection, Database references