8YHL | pdb_00008yhl

The Crystal Structure of Tgf-Beta Type I Receptor (Alk5) from Biortus

• PDB DOI: https://doi.org/10.2210/pdb8YHL/pdb

• Classification: TRANSFERASE
• Organism(s): Homo sapiens
• Expression System: Spodoptera frugiperda
• Mutation(s): No 


• Deposited: 2024-02-28 Released: 2024-03-13 
• Deposition Author(s): Wang, F., Cheng, W., Lv, Z., Meng, Q., Xu, Y.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.47 Å
• R-Value Free: 
  0.193 (Depositor), 0.203 (DCC) 
• R-Value Work: 
  0.163 (Depositor), 0.172 (DCC) 

Starting Model: experimental

Literature

The Crystal Structure of Tgf-Beta Type I Receptor (Alk5) from Biortus

Wang, F., Cheng, W., Lv, Z., Meng, Q., Xu, Y.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content 

• Total Structure Weight: 35.58 kDa 
• Atom Count: 2,868 
• Modeled Residue Count: 304 
• Deposited Residue Count: 306 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
TGF-beta receptor type-1	A	306	Homo sapiens	Mutation(s): 0  Gene Names: TGFBR1, ALK5, SKR4 EC: 2.7.11.30
UniProt & NIH Common Fund Data Resources
Find proteins for P36897 (Homo sapiens) Explore P36897  Go to UniProtKB:  P36897
PHAROS:  P36897 GTEx:  ENSG00000106799

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
A1D6I (Subject of Investigation/LOI)	B [auth A]	Vactosertib C22 H18 F N7 FJCDSQATIJKQKA-UHFFFAOYSA-N
EDO (Subject of Investigation/LOI)	C [auth A], E [auth A]	1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N
ACY (Subject of Investigation/LOI)	D [auth A], F [auth A]	ACETIC ACID C2 H4 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.47 Å
• R-Value Free:  0.193 (Depositor), 0.203 (DCC) 
• R-Value Work:  0.163 (Depositor), 0.172 (DCC) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 41.813	α = 90
b = 77.464	β = 90
c = 89.524	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2024-03-13 
Deposition Author(s): Wang, F., Cheng, W., Lv, Z., Meng, Q., Xu, Y.

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Funding Organization	Location	Grant Number
Not funded	China	--

Revision History  

• Version 1.0: 2024-03-13
  Type: Initial release
  
• Version 2.0: 2024-11-20
  Changes: Atomic model, Author supporting evidence, Data collection, Derived calculations, Non-polymer description, Structure summary