8YGX

Structure of the PYK2 from Biortus.

• PDB DOI: https://doi.org/10.2210/pdb8YGX/pdb

• Classification: TRANSFERASE
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2024-02-27 Released: 2024-03-13 
• Deposition Author(s): Wang, F., Cheng, W., Lv, Z., Meng, Q., Zhang, B.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 0.270 
• R-Value Work: 0.207 

Starting Model: experimental

Literature

Structure of the PYK2 from Biortus.

Wang, F., Cheng, W., Lv, Z., Meng, Q., Zhang, B.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 32.19 kDa 
• Atom Count: 2,274 
• Modelled Residue Count: 255 
• Deposited Residue Count: 277 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein-tyrosine kinase 2-beta	A	277	Homo sapiens	Mutation(s): 0  Gene Names: PTK2B, FAK2, PYK2, RAFTK EC: 2.7.10.2
UniProt & NIH Common Fund Data Resources
Find proteins for Q14289 (Homo sapiens) Go to UniProtKB:  Q14289
PHAROS:  Q14289 GTEx:  ENSG00000120899

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 0.270 
• R-Value Work: 0.207 
• Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 37.253	α = 90
b = 94.514	β = 91.68
c = 42.668	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-03-13 
Deposition Author(s): Wang, F., Cheng, W., Lv, Z., Meng, Q., Zhang, B.

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Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2024-03-13
  Type: Initial release