Structural basis and analysis of raccoon dog ACE2 binding to different SARS-CoV-2 spike RBDs
Luo, C.L., Li, L.J., Gao, G.F.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Angiotensin-converting enzyme | 605 | Nyctereutes procyonoides | Mutation(s): 0  Gene Names: ACE2, NYPRO_LOCUS14582 EC: 3.4 | ||
UniProt | |||||
Find proteins for B4XEP4 (Nyctereutes procyonoides) Explore B4XEP4  Go to UniProtKB:  B4XEP4 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | B4XEP4 | ||||
Glycosylation | |||||
Glycosylation Sites: 4 | |||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Spike protein S1 | 223 | Severe acute respiratory syndrome coronavirus 2 | Mutation(s): 1  Gene Names: S, 2 | ||
UniProt | |||||
Find proteins for P0DTC2 (Severe acute respiratory syndrome coronavirus 2) Explore P0DTC2  Go to UniProtKB:  P0DTC2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0DTC2 | ||||
Glycosylation | |||||
Glycosylation Sites: 1 | Go to GlyGen: P0DTC2-1 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG (Subject of Investigation/LOI) Query on NAG | H [auth A] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
ZN (Subject of Investigation/LOI) Query on ZN | G [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |
Task | Software Package | Version |
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MODEL REFINEMENT | PHENIX | 1.20.1_4487: |
Funding Organization | Location | Grant Number |
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National Natural Science Foundation of China (NSFC) | China | -- |