8YF0

Cryo-EM structure of human SV2A

PDB DOI: https://doi.org/10.2210/pdb8YF0/pdb
EM Map EMD-39206: EMDB EMDataResource

Classification: TRANSPORT PROTEIN
Organism(s): Homo sapiens
Expression System: Homo sapiens
Mutation(s): No
Membrane Protein: Yes PDBTM

Deposited: 2024-02-23 Released: 2024-06-12
Deposition Author(s): Qu, Q., Liu, S., Zhou, Z.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.49 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Cryo-EM structure of human SV2A

Qu, Q., Liu, S., Zhou, Z.

To be published.

Macromolecule Content

Total Structure Weight: 168.79 kDa
Atom Count: 9,181
Modelled Residue Count: 1,159
Deposited Residue Count: 1,510
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Synaptic vesicle glycoprotein 2A	A [auth B], B [auth C]	755	Homo sapiens	Mutation(s): 0 Gene Names: SV2A, KIAA0736, PSEC0174 Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for Q7L0J3 (Homo sapiens) Explore Q7L0J3 Go to UniProtKB: Q7L0J3
PHAROS: Q7L0J3 GTEx: ENSG00000159164
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q7L0J3
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.49 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.19.2_4158:

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-06-12

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	32171194

Revision History (Full details and data files)

Version 1.0: 2024-06-12
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.