8Y6M | pdb_00008y6m

The structure of Oryza sativa HKT2;1


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.91 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 8Y6M

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Literature

Structural insights into the Oryza sativa cation transporters HKTs in salt tolerance.

Gao, R.Jia, Y.Xu, X.Fu, P.Zhou, J.Yang, G.

(2024) J Integr Plant Biol 66: 700-708

  • DOI: https://doi.org/10.1111/jipb.13632
  • Primary Citation Related Structures: 
    8Y6J, 8Y6L, 8Y6M, 8Y6N

  • PubMed Abstract: 

    The high-affinity potassium transporters (HKTs), selectively permeable to either Na + alone or Na + /K + , play pivotal roles in maintaining plant Na + /K + homeostasis. Although their involvement in salt tolerance is widely reported, the molecular underpinnings of Oryza sativa HKTs remain elusive. In this study, we elucidate the structures of OsHKT1;1 and OsHKT2;1, representing two distinct classes of rice HKTs. The dimeric assembled OsHKTs can be structurally divided into four domains. At the dimer interface, a half-helix or a loop in the third domain is coordinated by the C-terminal region of the opposite subunit. Additionally, we present the structures of OsHKT1;5 salt-tolerant and salt-sensitive variants, a key quantitative trait locus associated with salt tolerance. The salt-tolerant variant of OsHKT1;5 exhibits enhanced Na + transport capability and displays a more flexible conformation. These findings shed light on the molecular basis of rice HKTs and provide insights into their role in salt tolerance.


  • Organizational Affiliation
    • State Key Laboratory of Plant Environmental Resilience, Frontiers Science Center for Molecular Design Breeding, College of Biological Sciences, China Agricultural University, Beijing, 100193, China.

Macromolecule Content 

  • Total Structure Weight: 140.06 kDa 
  • Atom Count: 6,502 
  • Modeled Residue Count: 826 
  • Deposited Residue Count: 1,256 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Cation transporter HKT2;1,Soluble cytochrome b562
A, B
628Oryza sativa Indica Group x Oryza nivaraEscherichia coliMutation(s): 0 
Gene Names: HKT21HKT1cybC
Membrane Entity: Yes 
UniProt
Find proteins for A2YGP9 (Oryza sativa subsp. indica)
Explore A2YGP9 
Go to UniProtKB:  A2YGP9
Find proteins for P0ABE7 (Escherichia coli)
Explore P0ABE7 
Go to UniProtKB:  P0ABE7
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupsP0ABE7A2YGP9
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.91 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China32171188

Revision History  (Full details and data files)

  • Version 1.0: 2024-12-11
    Type: Initial release