8Y1O | pdb_00008y1o

Cryo-EM structure of human ABCA7 in the apo state

PDB DOI: https://doi.org/10.2210/pdb8Y1O/pdb
EM Map EMD-38841: EMDB EMDataResource

Classification: LIPID TRANSPORT
Organism(s): Homo sapiens
Expression System: Homo sapiens
Mutation(s): No
Membrane Protein: Yes PDBTM

Deposited: 2024-01-25 Released: 2025-02-12
Deposition Author(s): Fang, S.C.
Funding Organization(s): Ministry of Science and Technology (MoST, China)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.92 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 8Y1O

This is version 1.1 of the entry. See complete history.

Literature

Cryo-EM structure of human ABCA7 in the apo state

Fang, S.C., Zhou, C.Z., Hou, W.T., Chen, Y.

To be published.

Macromolecule Content

Total Structure Weight: 234.6 kDa
Atom Count: 14,226
Modeled Residue Count: 1,844
Deposited Residue Count: 2,146
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Phospholipid-transporting ATPase ABCA7	A	2,146	Homo sapiens	Mutation(s): 0 Gene Names: ABCA7 EC: 7.6.2.1 Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for Q8IZY2 (Homo sapiens) Explore Q8IZY2 Go to UniProtKB: Q8IZY2
PHAROS: Q8IZY2 GTEx: ENSG00000064687
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8IZY2
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.92 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX

Structure Validation

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View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2025-02-12

Deposition Author(s):

Funding Organization	Location	Grant Number
Ministry of Science and Technology (MoST, China)	China	2020YFA0509302

Revision History (Full details and data files)

Version 1.0: 2025-02-12
Type: Initial release
Version 1.1: 2025-07-23
Changes: Data collection

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.