8XU2 | pdb_00008xu2

DaCS-citrate complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.19 Å
  • R-Value Free: 
    0.203 (Depositor), 0.211 (DCC) 
  • R-Value Work: 
    0.175 (Depositor), 0.184 (DCC) 
  • R-Value Observed: 
    0.176 (Depositor) 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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Ligand Structure Quality Assessment 


This is version 1.0 of the entry. See complete history

Literature

DaCS-citrate complex

Yang, L.Y.Fang, Y.J.

To be published.

Macromolecule Content 

  • Total Structure Weight: 395.13 kDa 
  • Atom Count: 29,116 
  • Modeled Residue Count: 3,483 
  • Deposited Residue Count: 3,504 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
citrate synthase
A, B, C, D, E
A, B, C, D, E, F, G, H
438Desulfurella acetivorans A63Mutation(s): 19 
EC: 2.3.3.16
UniProt
Find proteins for A0A7C6A739 (Desulfurella acetivorans)
Explore A0A7C6A739 
Go to UniProtKB:  A0A7C6A739
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A7C6A739
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.19 Å
  • R-Value Free:  0.203 (Depositor), 0.211 (DCC) 
  • R-Value Work:  0.175 (Depositor), 0.184 (DCC) 
  • R-Value Observed: 0.176 (Depositor) 
Space Group: H 3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 362.335α = 90
b = 362.335β = 90
c = 77.886γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China--

Revision History  (Full details and data files)

  • Version 1.0: 2025-01-22
    Type: Initial release