8XRH

The crystal structure of AsfvTopII ATPase domain in complex with AMPPNP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.25 Å
  • R-Value Free: 0.195 
  • R-Value Work: 0.186 
  • R-Value Observed: 0.186 

Starting Model: in silico
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Literature

The crystal structure of AsfvTopII ATPase domain in complex with AMPPNP

Yang, J.Gan, J.H.

(2024) Nat Commun 


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
DNA topoisomerase 2408African swine fever virus BA71VMutation(s): 0 
Gene Names: TOPBa71V-112P1192R
EC: 5.6.2.2
UniProt
Find proteins for Q00942 (African swine fever virus (strain Badajoz 1971 Vero-adapted))
Explore Q00942 
Go to UniProtKB:  Q00942
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ00942
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.25 Å
  • R-Value Free: 0.195 
  • R-Value Work: 0.186 
  • R-Value Observed: 0.186 
  • Space Group: P 61 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 85.65α = 90
b = 85.65β = 90
c = 211.83γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
Aimlessdata scaling
XDSdata reduction
PHASERphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China--

Revision History  (Full details and data files)

  • Version 1.0: 2024-08-07
    Type: Initial release