8XOV | pdb_00008xov

The Crystal Structure of N-terminal kinase domain of human RSK-1 from Biortus.

• PDB DOI: https://doi.org/10.2210/pdb8XOV/pdb

• Classification: TRANSFERASE
• Organism(s): Homo sapiens
• Expression System: Spodoptera frugiperda
• Mutation(s): No 


• Deposited: 2024-01-02 Released: 2024-03-06 
• Deposition Author(s): Wang, F., Cheng, W., Lv, Z., Meng, Q., Zhang, B.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.55 Å
• R-Value Free: 
  0.252 (Depositor), 0.253 (DCC) 
• R-Value Work: 
  0.203 (Depositor), 0.209 (DCC) 

Starting Model: experimental

Literature

The Crystal Structure of N-terminal kinase domain of human RSK-1 from Biortus.

Wang, F., Cheng, W., Lv, Z., Meng, Q., Zhang, B.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content 

• Total Structure Weight: 37.47 kDa 
• Atom Count: 2,207 
• Modeled Residue Count: 261 
• Deposited Residue Count: 321 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein S6 kinase alpha-1	A	321	Homo sapiens	Mutation(s): 0  Gene Names: RPS6KA1, MAPKAPK1A, RSK1 EC: 2.7.11.1
UniProt & NIH Common Fund Data Resources
Find proteins for Q15418 (Homo sapiens) Explore Q15418  Go to UniProtKB:  Q15418
PHAROS:  Q15418 GTEx:  ENSG00000117676

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
ANP (Subject of Investigation/LOI)	B [auth A]	PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER C10 H17 N6 O12 P3 PVKSNHVPLWYQGJ-KQYNXXCUSA-N
EDO	C [auth A], D [auth A], E [auth A]	1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.55 Å
• R-Value Free:  0.252 (Depositor), 0.253 (DCC) 
• R-Value Work:  0.203 (Depositor), 0.209 (DCC) 

Space Group: I 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 33.911	α = 90
b = 54.346	β = 94.075
c = 207.028	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2024-03-06 
Deposition Author(s): Wang, F., Cheng, W., Lv, Z., Meng, Q., Zhang, B.

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Funding Organization	Location	Grant Number
Not funded	China	--

Revision History  

• Version 1.0: 2024-03-06
  Type: Initial release