Transcription of the Plant RNA polymerase IV is prone to backtracking
Huang, K., Fang, C.L., Zhang, Y.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerase IV subunit 1 | 1,498 | Arabidopsis thaliana | Mutation(s): 0  Gene Names: NRPD1, NRPD1a, RMD3, RPD1, SDE4, SMD2, At1g63020, F16M19.19, F16P17.19 EC: 2.7.7.6 | ![]() | |
UniProt | |||||
Find proteins for Q9LQ02 (Arabidopsis thaliana) Explore Q9LQ02  Go to UniProtKB:  Q9LQ02 | |||||
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Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9LQ02 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerases IV and V subunit 2 | 1,172 | Arabidopsis thaliana | Mutation(s): 0  EC: 2.7.7.6 | ![]() | |
UniProt | |||||
Find proteins for Q9LK40 (Arabidopsis thaliana) Explore Q9LK40  Go to UniProtKB:  Q9LK40 | |||||
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Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9LK40 | ||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerases II, IV and V subunit 3 | 319 | Arabidopsis thaliana | Mutation(s): 0  | ![]() | |
UniProt | |||||
Find proteins for Q39211 (Arabidopsis thaliana) Explore Q39211  Go to UniProtKB:  Q39211 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q39211 | ||||
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Entity ID: 4 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerases IV and V subunit 4 | 205 | Arabidopsis thaliana | Mutation(s): 0  | ![]() | |
UniProt | |||||
Find proteins for Q6DBA5 (Arabidopsis thaliana) Explore Q6DBA5  Go to UniProtKB:  Q6DBA5 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q6DBA5 | ||||
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Entity ID: 5 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerases II and IV subunit 5A | 205 | Arabidopsis thaliana | Mutation(s): 0  | ![]() | |
UniProt | |||||
Find proteins for O81098 (Arabidopsis thaliana) Explore O81098  Go to UniProtKB:  O81098 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O81098 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 6 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerases II, IV and V subunit 6A | 144 | Arabidopsis thaliana | Mutation(s): 0  | ![]() | |
UniProt | |||||
Find proteins for Q9FJ98 (Arabidopsis thaliana) Explore Q9FJ98  Go to UniProtKB:  Q9FJ98 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9FJ98 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 7 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerase IV subunit 7 | 174 | Arabidopsis thaliana | Mutation(s): 0  | ![]() | |
UniProt | |||||
Find proteins for Q8LE42 (Arabidopsis thaliana) Explore Q8LE42  Go to UniProtKB:  Q8LE42 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q8LE42 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 8 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerases II, IV and V subunit 8B | 146 | Arabidopsis thaliana | Mutation(s): 0  | ![]() | |
UniProt | |||||
Find proteins for Q9M1A8 (Arabidopsis thaliana) Explore Q9M1A8  Go to UniProtKB:  Q9M1A8 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9M1A8 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 9 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerases II, IV and V subunit 9A | 114 | Arabidopsis thaliana | Mutation(s): 0  | ![]() | |
UniProt | |||||
Find proteins for Q6NLH0 (Arabidopsis thaliana) Explore Q6NLH0  Go to UniProtKB:  Q6NLH0 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q6NLH0 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 10 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerases II, IV and V subunit 10 | 71 | Arabidopsis thaliana | Mutation(s): 0  | ![]() | |
UniProt | |||||
Find proteins for Q8LFJ6 (Arabidopsis thaliana) Explore Q8LFJ6  Go to UniProtKB:  Q8LFJ6 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q8LFJ6 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 11 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerases II, IV and V subunit 11 | 116 | Arabidopsis thaliana | Mutation(s): 0  | ![]() | |
UniProt | |||||
Find proteins for Q38859 (Arabidopsis thaliana) Explore Q38859  Go to UniProtKB:  Q38859 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q38859 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 12 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerases II, IV and V subunit 12 | 51 | Arabidopsis thaliana | Mutation(s): 0  | ![]() | |
UniProt | |||||
Find proteins for Q9FLM8 (Arabidopsis thaliana) Explore Q9FLM8  Go to UniProtKB:  Q9FLM8 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9FLM8 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 13 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
RNA-dependent RNA polymerase 2 | 1,133 | Arabidopsis thaliana | Mutation(s): 0  EC: 2.7.7.48 | ![]() | |
UniProt | |||||
Find proteins for O82504 (Arabidopsis thaliana) Explore O82504  Go to UniProtKB:  O82504 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O82504 | ||||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 14 | |||||
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Molecule | Chains | Length | Organism | Image | |
Non-template DNA | 20 | synthetic construct | ![]() | ||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 15 | |||||
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Molecule | Chains | Length | Organism | Image | |
RNA | 15 | synthetic construct | ![]() | ||
Sequence AnnotationsExpand | |||||
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Entity ID: 16 | |||||
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Molecule | Chains | Length | Organism | Image | |
Template DNA | P [auth Q] | 33 | synthetic construct | ![]() | |
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ZN Query on ZN | Q [auth A] S [auth A] T [auth A] U [auth B] V [auth C] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
MG Query on MG | R [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Funding Organization | Location | Grant Number |
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National Natural Science Foundation of China (NSFC) | China | -- |