8XJL

PGF2-alpha bound Prostaglandin F2-alpha receptor-Gq Protein Complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.77 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structural basis for ligand recognition and activation of the prostanoid receptors.

Li, X.Zhang, X.Wen, X.Zhang, D.Qu, C.Miao, X.Zhang, W.Zhang, R.Liu, G.Xiao, P.Sun, J.P.Gong, W.

(2024) Cell Rep 43: 113893-113893

  • DOI: https://doi.org/10.1016/j.celrep.2024.113893
  • Primary Citation of Related Structures:  
    8XJK, 8XJL, 8XJM, 8XJN, 8XJO

  • PubMed Abstract: 

    Prostaglandin F (PGF ) and thromboxane A 2 (TXA 2 ) are endogenous arachidonic acid metabolites, modulating diverse physiological processes including inflammation and cardiovascular homeostasis through activating PGF receptor (FP) and TXA 2 receptor (TP). Ligands targeting FP and TP have demonstrated efficacy in treating conditions like glaucoma and cardiovascular diseases in humans, as well as reproductive-related diseases in animals. Here, we present five cryoelectron microscopy structures illustrating FP and TP in complex with G q and bound to PGF (endogenous ligand), latanoprost acid (a clinical drug), and two other synthetic agonists. Combined with mutational and functional studies, these structures reveal not only structural features for the specific recognition of endogenous ligands and attainment of receptor selectivity of FP and TP but also the common mechanisms of receptor activation and G q protein coupling. The findings may enrich our knowledge of ligand recognition and signal transduction of the prostanoid receptor family and facilitate rational ligand design toward these two receptors.


  • Organizational Affiliation

    Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, Anhui 230026, China.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Engineered miniGq246synthetic constructMutation(s): 0 
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1376Homo sapiensMutation(s): 0 
Gene Names: GNB1
UniProt & NIH Common Fund Data Resources
Find proteins for P62873 (Homo sapiens)
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Go to UniProtKB:  P62873
PHAROS:  P62873
GTEx:  ENSG00000078369 
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UniProt GroupP62873
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-271Homo sapiensMutation(s): 0 
Gene Names: GNG2
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P59768 (Homo sapiens)
Explore P59768 
Go to UniProtKB:  P59768
PHAROS:  P59768
GTEx:  ENSG00000186469 
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UniProt GroupP59768
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Antibody fragment scFv16D [auth E]254synthetic constructMutation(s): 0 
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Fusion tag,Prostaglandin F2-alpha receptor,LgBiTE [auth R]588synthetic constructHomo sapiensMutation(s): 0 
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P43088 (Homo sapiens)
Explore P43088 
Go to UniProtKB:  P43088
PHAROS:  P43088
GTEx:  ENSG00000122420 
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UniProt GroupP43088
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
UGU (Subject of Investigation/LOI)
Query on UGU

Download Ideal Coordinates CCD File 
F [auth R](Z)-7-[(1R,2R,3R,5S)-3,5-bis(oxidanyl)-2-[(E,3S)-3-oxidanyloct-1-enyl]cyclopentyl]hept-5-enoic acid
C20 H34 O5
PXGPLTODNUVGFL-YNNPMVKQSA-N
Binding Affinity Annotations 
IDSourceBinding Affinity
UGU BindingDB:  8XJL Ki: 119 (nM) from 1 assay(s)
IC50: min: 2.5, max: 43 (nM) from 4 assay(s)
EC50: min: 13, max: 79 (nM) from 4 assay(s)
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.77 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.20.1_4487:

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Ministry of Science and Technology (MoST, China)China2019YFA0904100
National Natural Science Foundation of China (NSFC)ChinaT2221005

Revision History  (Full details and data files)

  • Version 1.0: 2024-02-28
    Type: Initial release
  • Version 1.1: 2024-03-20
    Changes: Database references
  • Version 1.2: 2024-11-13
    Changes: Data collection, Structure summary