8XB6 | pdb_00008xb6

Portal-vertex of SH-Ab15497 in C1 symmetry

• PDB DOI: https://doi.org/10.2210/pdb8XB6/pdb
• EM Map EMD-38212: EMDB EMDataResource

• Classification: VIRAL PROTEIN
• Organism(s): Acinetobacter phage SH-Ab 15497
• Mutation(s): No 


• Deposited: 2023-12-05 Released: 2024-12-11 
• Deposition Author(s): Lin, J., Zhao, S.W.
• Funding Organization(s): National Natural Science Foundation of China (NSFC)

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.70 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Starting Model: in silico

Literature

Portal-vertex of SH-Ab15497 in C1 symmetry

Lin, J., Zhao, S.W.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 22-mer - A12B10 

Local Symmetry: Cyclic - C12  (Explore in 3D)
Local Stoichiometry: Homo 12-mer - A12 Local Symmetry: Cyclic - C5  (Explore in 3D)
Local Stoichiometry: Homo 10-mer - B10 

Biological assembly 1 assigned by authors and generated by (software)

Biological Assembly Evidence: electron microscopy

Macromolecule Content 

• Total Structure Weight: 1,026.77 kDa 
• Atom Count: 66,825 
• Modeled Residue Count: 8,575 
• Deposited Residue Count: 9,282 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Portal protein	A, B, C, D, E, F, G, H, I, J, K, L	506	Acinetobacter phage SH-Ab 15497	Mutation(s): 0

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Major capsid protein	M, N, O, P, Q, R, S, T, U, V	321	Acinetobacter phage SH-Ab 15497	Mutation(s): 0

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.70 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

EM Software:

Task	Software Package	Version
RECONSTRUCTION	RELION

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2024-12-11 
Deposition Author(s): Lin, J., Zhao, S.W.

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Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	32370704
National Natural Science Foundation of China (NSFC)	China	32122024

Revision History  

• Version 1.0: 2024-12-11
  Type: Initial release