8X9Z | pdb_00008x9z

P-hexon capsomer of the VZV C-Capsid

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history. 


Literature

Insights into varicella-zoster virus assembly from the B- and C-capsid at near-atomic resolution structures

Cao, L., Wang, N., Lv, Z., Chen, W., Chen, Z., Song, L., Sha, X., Wang, G., Hu, Y., Lian, X., Cui, G., Fan, J., Quan, Y., Liu, H., Hou, H., Wang, X.

(2024) Hlife 2: 64-74


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Major capsid proteinA,
C [auth F],
D [auth G],
E [auth H],
F [auth I]		1,369Human alphaherpesvirus 3Mutation(s): 0 
Gene Names: MCP, 40
UniProt
Find proteins for P09245 (Varicella-zoster virus (strain Dumas))
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Major capsid proteinB [auth E]1,370Human alphaherpesvirus 3Mutation(s): 0 
Gene Names: MCP, 40
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Major capsid proteinG [auth J]1,371Human alphaherpesvirus 3Mutation(s): 0 
Gene Names: MCP, 40
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Small capsomere-interacting protein94Human alphaherpesvirus 3Mutation(s): 0 
Gene Names: SCP
UniProt
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UniProt GroupU5NQG6
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
CVC1N [auth k]550Human alphaherpesvirus 3Mutation(s): 0 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Capsid vertex component 2O [auth l]94Human alphaherpesvirus 3Mutation(s): 0 
Gene Names: CVC2, UL25
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Capsid vertex component 2P [auth m]80Human alphaherpesvirus 3Mutation(s): 0 
Gene Names: CVC2, UL25
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
Large tegument protein deneddylaseQ [auth n],
R [auth o]		47Human alphaherpesvirus 3Mutation(s): 0 
Gene Names: UL36
EC: 3.4.19.12 (PDB Primary Data), 3.4.22 (PDB Primary Data)
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
Tri2AS [auth P],
T [auth a]		256Human alphaherpesvirus 3Mutation(s): 0 
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
Tri2AU [auth V],
V [auth b]		263Human alphaherpesvirus 3Mutation(s): 0 
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
Tri1W [auth c],
X [auth h]		286Human alphaherpesvirus 3Mutation(s): 0 
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION

Structure Validation

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View more in-depth experimental data
Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2025-11-19
    Type: Initial release