8X9Z | pdb_00008x9z

P-hexon capsomer of the VZV C-Capsid

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

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This is version 1.0 of the entry. See complete history. 

Literature

Insights into varicella-zoster virus assembly from the B- and C-capsid at near-atomic resolution structures

Cao, L., Wang, N., Lv, Z., Chen, W., Chen, Z., Song, L., Sha, X., Wang, G., Hu, Y., Lian, X., Cui, G., Fan, J., Quan, Y., Liu, H., Hou, H., Wang, X.

(2024) Hlife 2: 64-74

Macromolecule Content 

  • Total Structure Weight: 1,395.63 kDa 
  • Atom Count: 93,092 
  • Modeled Residue Count: 12,077 
  • Deposited Residue Count: 12,578 
  • Unique protein chains: 11

Macromolecules

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Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Major capsid proteinA,
C [auth F],
D [auth G],
E [auth H],
F [auth I]		1,369Human alphaherpesvirus 3Mutation(s): 0 
Gene Names: MCP, 40
UniProt
Find proteins for P09245 (Varicella-zoster virus (strain Dumas))
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Go to UniProtKB:  P09245
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UniProt GroupP09245
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Reference Sequence
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Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Major capsid proteinB [auth E]1,370Human alphaherpesvirus 3Mutation(s): 0 
Gene Names: MCP, 40
UniProt
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Go to UniProtKB:  P09245
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UniProt GroupP09245
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Reference Sequence
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Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
Major capsid proteinG [auth J]1,371Human alphaherpesvirus 3Mutation(s): 0 
Gene Names: MCP, 40
UniProt
Find proteins for P09245 (Varicella-zoster virus (strain Dumas))
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Go to UniProtKB:  P09245
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UniProt GroupP09245
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Reference Sequence
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Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
Small capsomere-interacting protein94Human alphaherpesvirus 3Mutation(s): 0 
Gene Names: SCP
UniProt
Find proteins for U5NQG6 (Human herpesvirus 3)
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UniProt GroupU5NQG6
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Reference Sequence
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Entity ID: 5
MoleculeChains  Sequence LengthOrganismDetailsImage
CVC1N [auth k]550Human alphaherpesvirus 3Mutation(s): 0 
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Entity ID: 6
MoleculeChains  Sequence LengthOrganismDetailsImage
Capsid vertex component 2O [auth l]94Human alphaherpesvirus 3Mutation(s): 0 
Gene Names: CVC2, UL25
UniProt
Find proteins for P10209 (Human herpesvirus 1 (strain 17))
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Reference Sequence
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Entity ID: 7
MoleculeChains  Sequence LengthOrganismDetailsImage
Capsid vertex component 2P [auth m]80Human alphaherpesvirus 3Mutation(s): 0 
Gene Names: CVC2, UL25
UniProt
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Reference Sequence
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Entity ID: 8
MoleculeChains  Sequence LengthOrganismDetailsImage
Large tegument protein deneddylaseQ [auth n],
R [auth o]		47Human alphaherpesvirus 3Mutation(s): 0 
Gene Names: UL36
EC: 3.4.19.12 (PDB Primary Data), 3.4.22 (PDB Primary Data)
UniProt
Find proteins for P10220 (Human herpesvirus 1 (strain 17))
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Reference Sequence
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Entity ID: 9
MoleculeChains  Sequence LengthOrganismDetailsImage
Tri2AS [auth P],
T [auth a]		256Human alphaherpesvirus 3Mutation(s): 0 
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Entity ID: 10
MoleculeChains  Sequence LengthOrganismDetailsImage
Tri2AU [auth V],
V [auth b]		263Human alphaherpesvirus 3Mutation(s): 0 
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Entity ID: 11
MoleculeChains  Sequence LengthOrganismDetailsImage
Tri1W [auth c],
X [auth h]		286Human alphaherpesvirus 3Mutation(s): 0 

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION

Structure Validation

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Entry History 

& Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2025-11-19
    Type: Initial release