8X9W | pdb_00008x9w

portal vertex capsomer of the VZV C-Capsid

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history. 


Literature

Insights into varicella-zoster virus assembly from the B- and C-capsid at near-atomic resolution structures

Cao, L., Wang, N., Lv, Z., Chen, W., Chen, Z., Song, L., Sha, X., Wang, G., Hu, Y., Lian, X., Cui, G., Fan, J., Quan, Y., Liu, H., Hou, H., Wang, X.

(2024) Hlife 2: 64-74


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Major capsid protein
A, C
1,387Human alphaherpesvirus 3Mutation(s): 0 
Gene Names: MCP, 40
UniProt
Find proteins for P09245 (Varicella-zoster virus (strain Dumas))
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UniProt GroupP09245
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
coiled-coil domain of portal87Human alphaherpesvirus 3Mutation(s): 0 
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Tri2AD [auth F]297Human alphaherpesvirus 3Mutation(s): 0 
UniProt
Find proteins for P09291 (Varicella-zoster virus (strain Dumas))
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Tri2BJ [auth O]307Human alphaherpesvirus 3Mutation(s): 0 
UniProt
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Tri1O [auth X]289Human alphaherpesvirus 3Mutation(s): 0 
UniProt
Find proteins for P09276 (Varicella-zoster virus (strain Dumas))
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UniProt GroupP09276
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
CVC1P [auth k]550Human alphaherpesvirus 3Mutation(s): 0 
UniProt
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UniProt GroupP10201
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Capsid vertex component 2Q [auth l],
R [auth m]		94Human alphaherpesvirus 3Mutation(s): 0 
Gene Names: CVC2, UL25
UniProt
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
Large tegument protein deneddylaseS [auth n],
T [auth o]		47Human alphaherpesvirus 3Mutation(s): 0 
Gene Names: UL36
EC: 3.4.19.12 (PDB Primary Data), 3.4.22 (PDB Primary Data)
UniProt
Find proteins for I1UYK0 (Human herpesvirus 1)
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UniProt GroupI1UYK0
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX

Structure Validation

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Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2025-04-30
    Type: Initial release
  • Version 1.1: 2025-07-02
    Changes: Data collection