8WZD | pdb_00008wzd

The Crystal Structure of PKCi from Biortus

PDB DOI: https://doi.org/10.2210/pdb8WZD/pdb

Classification: HYDROLASE
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2023-11-01 Released: 2023-11-29
Deposition Author(s): Wang, F., Cheng, W., Lv, Z., Ju, C., Ni, C.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.05 Å
R-Value Free:
0.217 (Depositor), 0.223 (DCC)
R-Value Work:
0.171 (Depositor), 0.182 (DCC)

Starting Model: experimental
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This is version 1.0 of the entry. See complete history.

Literature

The Crystal Structure of PKCi from Biortus

Wang, F., Cheng, W., Lv, Z., Ju, C., Ni, C.

To be published.

Macromolecule Content

Total Structure Weight: 27.51 kDa
Atom Count: 1,986
Modeled Residue Count: 231
Deposited Residue Count: 252
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Adenosine 5'-monophosphoramidase HINT1	A, B	126	Homo sapiens	Mutation(s): 0 Gene Names: HINT1, HINT, PKCI1, PRKCNH1 EC: 3.9.1 (PDB Primary Data), 3.4.22 (PDB Primary Data)
UniProt & NIH Common Fund Data Resources
Find proteins for P49773 (Homo sapiens) Explore P49773 Go to UniProtKB: P49773
PHAROS: P49773 GTEx: ENSG00000169567
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P49773
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.05 Å
R-Value Free: 0.217 (Depositor), 0.223 (DCC)
R-Value Work: 0.171 (Depositor), 0.182 (DCC)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 45.76	α = 90
b = 75.047	β = 90
c = 80.266	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2023-11-29

Deposition Author(s):

Funding Organization	Location	Grant Number
Not funded		--

Revision History (Full details and data files)

Version 1.0: 2023-11-29
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.