8WU3

Crystal structure of RNA-dependent RNA polymerases from Alongshan virus

PDB DOI: https://doi.org/10.2210/pdb8WU3/pdb

Classification: VIRAL PROTEIN
Organism(s): Alongshan virus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2023-10-20 Released: 2024-02-07
Deposition Author(s): Liu, Z.Y., Han, P., Peng, Q., Qi, J.X.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.20 Å
R-Value Free: 0.275
R-Value Work: 0.257
R-Value Observed: 0.258

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structures of RNA-dependent RNA polymerases from Jingmen tick virus and Alongshan virus

Liu, Z., Peng, Q., Han, P., Kuai, L., Qi, J., Shi, Y.

(2024) hLife 2: 18-31

DOI: https://doi.org/10.1016/j.hlife.2023.10.006

Macromolecule Content

Total Structure Weight: 142.36 kDa
Atom Count: 9,503
Modelled Residue Count: 1,181
Deposited Residue Count: 1,244
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
RNA polymerase	A, B	622	Alongshan virus	Mutation(s): 0
UniProt
Find proteins for A0A344X2I6 (Alongshan virus) Explore A0A344X2I6 Go to UniProtKB: A0A344X2I6
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A344X2I6
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.20 Å
R-Value Free: 0.275
R-Value Work: 0.257
R-Value Observed: 0.258
Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 75.351	α = 90
b = 93.358	β = 98.09
c = 101.686	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-02-07

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	81871658

Revision History (Full details and data files)

Version 1.0: 2024-02-07
Type: Initial release
Version 1.1: 2024-05-01
Changes: Database references, Source and taxonomy, Structure summary

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.