Structural insight on tailored modulation of TLR4-mediated pro-inflammatory response by disaccharide lipid A mimetics
Fu, Y., Kim, H.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Lymphocyte antigen 96 | A [auth C], C [auth D] | 142 | Mus musculus | Mutation(s): 0  Gene Names: Ly96 | |
UniProt | |||||
Find proteins for Q9JHF9 (Mus musculus) Explore Q9JHF9  Go to UniProtKB:  Q9JHF9 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9JHF9 | ||||
Glycosylation | |||||
Glycosylation Sites: 2 | Go to GlyGen: Q9JHF9-1 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Toll-like receptor 4 | B [auth A], D [auth B] | 604 | Mus musculus | Mutation(s): 0  Gene Names: Tlr4 | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9QUK6 (Mus musculus) Explore Q9QUK6  Go to UniProtKB:  Q9QUK6 | |||||
IMPC:  MGI:96824 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9QUK6 | ||||
Glycosylation | |||||
Glycosylation Sites: 4 | Go to GlyGen: Q9QUK6-1 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 6 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
0IL (Subject of Investigation/LOI) Query on 0IL | H [auth C], U [auth D] | (3R)-3-(tetradecanoyloxy)tetradecanoic acid C28 H54 O4 IYESSKQVAKTOQB-AREMUKBSSA-N | |||
2IL (Subject of Investigation/LOI) Query on 2IL | G [auth C], T [auth D] | (3R)-3-(dodecanoyloxy)tetradecanoic acid C26 H50 O4 IKRFTYQBIVDIMM-XMMPIXPASA-N | |||
A1L01 (Subject of Investigation/LOI) Query on A1L01 | J [auth C], Q [auth A] | (3~{S})-3-decanoyloxytetradecanoic acid C24 H46 O4 WLNJGOIHOQOCJP-QFIPXVFZSA-N | |||
X6N (Subject of Investigation/LOI) Query on X6N | I [auth C], V [auth D] | [(2~{R},3~{S},4~{R},5~{S})-2-(hydroxymethyl)-5-methoxy-4,6-bis(oxidanyl)oxan-3-yl] dihydrogen phosphate C7 H15 O9 P NLMCYSYQBJOKBW-MSPRSRQBSA-N | |||
GP4 (Subject of Investigation/LOI) Query on GP4 | BA [auth B], P [auth A] | 2-amino-2-deoxy-4-O-phosphono-alpha-D-glucopyranose C6 H14 N O8 P QWDBGVNDGYUIAC-UKFBFLRUSA-N | |||
NAG Query on NAG | AA [auth B] E [auth C] F [auth C] K [auth A] L [auth A] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |
Task | Software Package | Version |
---|---|---|
RECONSTRUCTION | cryoSPARC | 4.2.1 |
MODEL REFINEMENT | PHENIX | 1.16_3549: |
Funding Organization | Location | Grant Number |
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Other government | Korea, Republic Of | Institute for Basic Science, IBS |