8WS0 | pdb_00008ws0

Crystal structure of human NEK7 S195D mutant

PDB DOI: https://doi.org/10.2210/pdb8WS0/pdb

Classification: CELL CYCLE
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2023-10-16 Released: 2025-04-16
Deposition Author(s): Bijpuria, S., Athresh, S., Subbiah, R., Mollard, A., Bearss, D.
Funding Organization(s): Other private

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.12 Å
R-Value Free:
0.242 (Depositor), 0.246 (DCC)
R-Value Work:
0.191 (Depositor), 0.197 (DCC)
R-Value Observed:
0.194 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 8WS0

This is version 1.0 of the entry. See complete history.

Literature

Crystal structure of human NEK7 S195D mutant

Bijpuria, S., Athresh, S., Subbiah, R., Mollard, A., Bearss, D.

To be published.

Macromolecule Content

Total Structure Weight: 71.4 kDa
Atom Count: 4,540
Modeled Residue Count: 537
Deposited Residue Count: 620
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Serine/threonine-protein kinase Nek7	A, B	310	Homo sapiens	Mutation(s): 1 Gene Names: NEK7 EC: 2.7.11.34
UniProt & NIH Common Fund Data Resources
Find proteins for Q8TDX7 (Homo sapiens) Explore Q8TDX7 Go to UniProtKB: Q8TDX7
PHAROS: Q8TDX7 GTEx: ENSG00000151414
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8TDX7
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.12 Å
R-Value Free: 0.242 (Depositor), 0.246 (DCC)
R-Value Work: 0.191 (Depositor), 0.197 (DCC)
R-Value Observed: 0.194 (Depositor)

Space Group: P 3₁ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 88.601	α = 90
b = 88.601	β = 90
c = 156.088	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
MOLREP	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2025-04-16

Deposition Author(s):

Funding Organization	Location	Grant Number
Other private	United States	--

Revision History (Full details and data files)

Version 1.0: 2025-04-16
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.