8WQQ | pdb_00008wqq

Proteomics study reveals that ASFV g5Rp protein interacts with eukaryotic translation initiation factor 5A and may regulate host translation

PDB DOI: https://doi.org/10.2210/pdb8WQQ/pdb

Classification: VIRAL PROTEIN
Organism(s): ASFV-like virus WU
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2023-10-12 Released: 2024-10-16
Deposition Author(s): Liang, R.Y., Xu, C.M., Zhao, X.M.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free:
0.287 (Depositor), 0.288 (DCC)
R-Value Work:
0.237 (Depositor), 0.238 (DCC)
R-Value Observed:
0.241 (Depositor)

Starting Model: experimental
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This is version 1.0 of the entry. See complete history.

Literature

Proteomics study reveals that ASFV g5Rp protein interacts with eukaryotic translation initiation factor 5A and may regulate host translation.

Liang, R.Y., Xu, C.M.

To be published.

Macromolecule Content

Total Structure Weight: 58.2 kDa
Atom Count: 4,283
Modeled Residue Count: 486
Deposited Residue Count: 486
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
mRNA-decapping protein g5R	A, B	243	ASFV-like virus WU	Mutation(s): 0 Gene Names: Ba71V-102 EC: 3.6.1.52 (UniProt), 3.1.3 (UniProt)
UniProt
Find proteins for P32092 (African swine fever virus (strain Badajoz 1971 Vero-adapted)) Explore P32092 Go to UniProtKB: P32092
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P32092
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free: 0.287 (Depositor), 0.288 (DCC)
R-Value Work: 0.237 (Depositor), 0.238 (DCC)
R-Value Observed: 0.241 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 74.199	α = 90
b = 77.296	β = 90
c = 96.779	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2024-10-16

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	32302912

Revision History (Full details and data files)

Version 1.0: 2024-10-16
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.