8WOC | pdb_00008woc

Cryo-EM structure of SIR2/HerA complex

PDB DOI: https://doi.org/10.2210/pdb8WOC/pdb
EM Map EMD-37682: EMDB EMDataResource

Classification: IMMUNE SYSTEM
Organism(s): Paenibacillus sp. 453mf
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2023-10-07 Released: 2024-09-11
Deposition Author(s): Yu, G., Liao, F., Li, X., Li, Z., Zhang, H.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.28 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 8WOC

This is version 1.1 of the entry. See complete history.

Literature

Cryo-EM structure of a bacterial protein

Yu, G., Liao, F., Li, X., Li, Z., Zhang, H.

To be published.

Macromolecule Content

Total Structure Weight: 771.02 kDa
Atom Count: 41,220
Modeled Residue Count: 5,845
Deposited Residue Count: 6,843
Unique protein chains: 2

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Helicase HerA central domain-containing protein	A B [auth D] E [auth L] F [auth M] G [auth N] A, B [auth D], E [auth L], F [auth M], G [auth N], H [auth O]	696	Paenibacillus sp. 453mf	Mutation(s): 0 Gene Names: SAMN04488601_104156

Find similar proteins by:

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
SIR2-like domain-containing protein	C [auth J] D [auth K] I [auth P] J [auth Q] K [auth R] C [auth J], D [auth K], I [auth P], J [auth Q], K [auth R], L [auth S], M [auth T]	381	Paenibacillus sp. 453mf	Mutation(s): 0 Gene Names: SAMN04488601_104157
UniProt
Find proteins for A0ACD6BAK5 (Paenibacillus sp. 453mf) Explore A0ACD6BAK5 Go to UniProtKB: A0ACD6BAK5
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0ACD6BAK5
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.28 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2024-09-11

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	32200496

Revision History (Full details and data files)

Version 1.0: 2024-09-11
Type: Initial release
Version 1.1: 2025-07-02
Changes: Data collection, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.