8WL2 | pdb_00008wl2

Cryo-EM structure of the membrane-anchored part of the flagellar motor-hook complex in the CW state.


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Models: in silico, experimental
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This is version 1.2 of the entry. See complete history


Literature

Structural basis of the bacterial flagellar motor rotational switching.

Tan, J.Zhang, L.Zhou, X.Han, S.Zhou, Y.Zhu, Y.

(2024) Cell Res 34: 788-801

  • DOI: https://doi.org/10.1038/s41422-024-01017-z
  • Primary Citation of Related Structures:  
    8WHT, 8WIW, 8WJR, 8WK3, 8WK4, 8WKI, 8WKK, 8WKQ, 8WL2, 8WLE, 8WLH, 8WLI, 8WLN, 8WLP, 8WLQ, 8WLT, 8WO5, 8WOE, 8XP0, 8XP1, 8YJT

  • PubMed Abstract: 

    The bacterial flagellar motor is a huge bidirectional rotary nanomachine that drives rotation of the flagellum for bacterial motility. The cytoplasmic C ring of the flagellar motor functions as the switch complex for the rotational direction switching from counterclockwise to clockwise. However, the structural basis of the rotational switching and how the C ring is assembled have long remained elusive. Here, we present two high-resolution cryo-electron microscopy structures of the C ring-containing flagellar basal body-hook complex from Salmonella Typhimurium, which are in the default counterclockwise state and in a constitutively active CheY mutant-induced clockwise state, respectively. In both complexes, the C ring consists of four subrings, but is in two different conformations. The CheY proteins are bound into an open groove between two adjacent protomers on the surface of the middle subring of the C ring and interact with the FliG and FliM subunits. The binding of the CheY protein induces a significant upward shift of the C ring towards the MS ring and inward movements of its protomers towards the motor center, which eventually remodels the structures of the FliG subunits and reverses the orientations and surface electrostatic potential of the α torque helices to trigger the counterclockwise-to-clockwise rotational switching. The conformational changes of the FliG subunits reveal that the stator units on the motor require a relocation process in the inner membrane during the rotational switching. This study provides unprecedented molecular insights into the rotational switching mechanism and a detailed overall structural view of the bacterial flagellar motors.


  • Organizational Affiliation

    Department of Gastroenterology of the Second Affiliated Hospital, School of Medicine and College of Animal Sciences, Life Sciences Institute, Zhejiang University, Hangzhou, Zhejiang, China.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar L-ring protein
A, B, C, D, E
232Salmonella enterica subsp. enterica serovar Typhimurium str. LT2Mutation(s): 0 
UniProt
Find proteins for P0A1N8 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720))
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar P-ring protein365Salmonella enterica subsp. enterica serovar Typhimurium str. LT2Mutation(s): 0 
UniProt
Find proteins for P15930 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720))
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar basal-body rod protein FlgG260Salmonella enterica subsp. enterica serovar Typhimurium str. LT2Mutation(s): 0 
UniProt
Find proteins for P0A1J3 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720))
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar hook protein FlgE403Salmonella enterica subsp. enterica serovar Typhimurium str. LT2Mutation(s): 0 
UniProt
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar basal-body rod protein FlgFSC [auth AA],
TC [auth AB],
UC [auth AC],
VC [auth AD],
WC [auth AE]
251Salmonella enterica subsp. enterica serovar Typhimurium str. LT2Mutation(s): 0 
UniProt
Find proteins for P16323 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720))
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar M-ring protein560Salmonella enterica subsp. enterica serovar Typhimurium str. LT2Mutation(s): 0 
UniProt
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar biosynthetic protein FliQIE [auth Aq],
JE [auth Ar],
KE [auth As],
QD [auth Ab]
89Salmonella enterica subsp. enterica serovar Typhimurium str. LT2Mutation(s): 0 
UniProt
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar biosynthetic protein FliRLE [auth At]264Salmonella enterica subsp. enterica serovar Typhimurium str. LT2Mutation(s): 0 
UniProt
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar biosynthetic protein FliPME [auth Au],
NE [auth Av],
OE [auth Aw],
PE [auth Ax],
QE [auth Ay]
245Salmonella enterica subsp. enterica serovar Typhimurium str. LT2Mutation(s): 0 
UniProt
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar hook-basal body complex protein FliE104Salmonella enterica subsp. enterica serovar Typhimurium str. LT2Mutation(s): 0 
UniProt
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar basal body rod protein FlgBAF [auth A9],
BF [auth A0],
XE [auth A6],
YE [auth A7],
ZE [auth A8]
138Salmonella enterica subsp. enterica serovar Typhimurium str. LT2Mutation(s): 0 
UniProt
Find proteins for P16437 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720))
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar basal-body rod protein FlgC134Salmonella enterica subsp. enterica serovar Typhimurium str. LT2Mutation(s): 0 
UniProt
Find proteins for P0A1I7 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720))
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC4.1.1
MODEL REFINEMENTPHENIX1.20.1_4487:

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China81925024
National Natural Science Foundation of China (NSFC)ChinaU23A20163
Ministry of Science and Technology (MoST, China)China2017YFA0503900

Revision History  (Full details and data files)

  • Version 1.0: 2024-09-04
    Type: Initial release
  • Version 1.1: 2024-10-16
    Changes: Data collection, Structure summary
  • Version 1.2: 2025-03-26
    Changes: Data collection, Database references