Download MendeleyStructure of Cul2-VCB-Protac-Wee1 complex at 3.6 Angstrom resolution.
Wang, P., Zhang, T.T.To be published.
8WDK | pdb_00008wdk
The complex structure of Cul2-VCB-Protac-Wee1
- PDB DOI: https://doi.org/10.2210/pdb8WDK/pdb
- EM Map EMD-37464: EMDB EMDataResource
- Classification: LIGASE
- Organism(s): Homo sapiens
- Expression System: Insect cell expression vector pTIE1, Escherichia coli
- Mutation(s): No
- Deposited: 2023-09-15 Released: 2024-09-18
- Funding Organization(s): Not funded
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 3.64 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Cullin-2 | 745 | Homo sapiens | Mutation(s): 0 Gene Names: CUL2 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q13617 (Homo sapiens) Explore Q13617 Go to UniProtKB: Q13617 | |||||
PHAROS: Q13617 GTEx: ENSG00000108094 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q13617 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| E3 ubiquitin-protein ligase RBX1, N-terminally processed | B [auth R] | 82 | Homo sapiens | Mutation(s): 0 Gene Names: RBX1 EC: 2.3.2.32 (UniProt), 2.3.2.27 (UniProt) |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P62877 (Homo sapiens) Explore P62877 Go to UniProtKB: P62877 | |||||
PHAROS: P62877 GTEx: ENSG00000100387 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P62877 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| von Hippel-Lindau disease tumor suppressor | C [auth V] | 155 | Homo sapiens | Mutation(s): 0 Gene Names: VHL |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P40337 (Homo sapiens) Explore P40337 Go to UniProtKB: P40337 | |||||
PHAROS: P40337 GTEx: ENSG00000134086 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P40337 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 4 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Elongin-B | D [auth B] | 104 | Homo sapiens | Mutation(s): 0 Gene Names: ELOB, TCEB2 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q15370 (Homo sapiens) Explore Q15370 Go to UniProtKB: Q15370 | |||||
PHAROS: Q15370 GTEx: ENSG00000103363 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q15370 | ||||
Sequence AnnotationsExpand | |||||
| |||||
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(by identity cutoff) | 3D Structure
Entity ID: 5 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Elongin-C | E [auth C] | 96 | Homo sapiens | Mutation(s): 0 Gene Names: ELOC |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q15369 (Homo sapiens) Explore Q15369 Go to UniProtKB: Q15369 | |||||
PHAROS: Q15369 GTEx: ENSG00000154582 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q15369 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 6 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Wee1-like protein kinase | F [auth W] | 286 | Homo sapiens | Mutation(s): 0 Gene Names: WEE1 EC: 2.7.10.2 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P30291 (Homo sapiens) Explore P30291 Go to UniProtKB: P30291 | |||||
PHAROS: P30291 GTEx: ENSG00000166483 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P30291 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| W6U (Subject of Investigation/LOI) Query on W6U | G [auth V] | (2S,4R)-1-[(2S)-3,3-dimethyl-2-[3-[4-[4-[4-[[3-oxidanylidene-1-[6-(2-oxidanylpropan-2-yl)pyridin-2-yl]-2-prop-2-enyl-pyrazolo[3,4-d]pyrimidin-6-yl]amino]phenyl]piperazin-1-yl]butoxy]propanoylamino]butanoyl]-N-[[4-(4-methyl-1,3-thiazol-5-yl)phenyl]methyl]-4-oxidanyl-pyrrolidine-2-carboxamide C55 H70 N12 O7 S QQLAKZIDPLGLSV-VZUPZQALSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 3.64 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
Entry History & Funding Information
Deposition Data
- Released Date: 2024-09-18 Deposition Author(s): Wang, P., Zhang, T.T.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Not funded | -- |
Revision History (Full details and data files)
- Version 1.0: 2024-09-18
Type: Initial release - Version 1.1: 2024-10-16
Changes: Data collection, Structure summary
