8WD7 | pdb_00008wd7

Structural organization of the palisade layer in isolated vaccinia virus cores

PDB DOI: https://doi.org/10.2210/pdb8WD7/pdb
EM Map EMD-37456: EMDB EMDataResource

Classification: VIRAL PROTEIN
Organism(s): Vaccinia virus WR
Mutation(s): No

Deposited: 2023-09-14 Released: 2024-09-18
Deposition Author(s): Liu, Y., Qu, X., Duan, M., Shi, X., Liu, S., Shi, Y., Gao, G.F.
Funding Organization(s): Other government

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 10.0 Å
Aggregation State: PARTICLE
Reconstruction Method: SUBTOMOGRAM AVERAGING

Starting Model: in silico
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wwPDB Validation 3D Report Full Report

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This is version 1.0 of the entry. See complete history.

Literature

Cryo-ET reveals A10 protein as a major component of the poxvirus palisade layer

Liu, Y., Qu, X., Duan, M., Shi, X., Liu, S., Shi, Y., Gao, G.F.

To be published.

Macromolecule Content

Total Structure Weight: 213.22 kDa
Atom Count: 1,842
Modeled Residue Count: 1,842
Deposited Residue Count: 1,842
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Core protein OPG136	A, B, C	614	Vaccinia virus WR	Mutation(s): 0
UniProt
Find proteins for P16715 (Vaccinia virus (strain Western Reserve)) Explore P16715 Go to UniProtKB: P16715
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P16715
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 10.0 Å
Aggregation State: PARTICLE
Reconstruction Method: SUBTOMOGRAM AVERAGING

EM Software:

Task	Software Package	Version
RECONSTRUCTION	RELION	3.13

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2024-09-18

Deposition Author(s):

Funding Organization	Location	Grant Number
Other government	China	--

Revision History (Full details and data files)

Version 1.0: 2024-09-18
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.