8WA4 | pdb_00008wa4

Solution structure of free ATF4 promoter G-quadruplex

PDB DOI: https://doi.org/10.2210/pdb8WA4/pdb
NAKB: 8WA4

Classification: DNA
Organism(s): Homo sapiens
Mutation(s): No

Deposited: 2023-09-07 Released: 2024-09-11
Deposition Author(s): Liu, Y.S., Wang, K.B.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 11
Selection Criteria: structures with the lowest energy

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Stabilizing ATF4 promoter G-quadruplex overcomes the resistance of glutamine-restricted cancer therapy

Xiao, C.M., Li, Y.P., Liu, Y.S., Dong, R.F., He, X.Y., Lin, Q., Zang, X., Wang, K.B., Xia, Y.Z., Kong, L.Y.

To be published.

Macromolecule Content

Total Structure Weight: 6.98 kDa
Atom Count: 469
Modeled Residue Count: 20
Deposited Residue Count: 20
Unique nucleic acid chains: 1

Macromolecules

Find similar nucleic acids by: Sequence | 3D Structure

Entity ID: 1
Molecule	Chains	Length	Organism	Image
DNA G-quadruplex	A [auth X]	20	Homo sapiens
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
DCM (Subject of Investigation/LOI) Query on DCM Download Ideal Coordinates CCD File SDF format, chain C [auth X] MOL2 format, chain C [auth X] mmCIF format, chain C [auth X]	C [auth X]	2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE C₉ H₁₄ N₃ O₇ P NCMVOABPESMRCP-SHYZEUOFSA-N		Interactions Focus chain C [auth X]
THM (Subject of Investigation/LOI) Query on THM Download Ideal Coordinates CCD File SDF format, chain B [auth X] MOL2 format, chain B [auth X] mmCIF format, chain B [auth X]	B [auth X]	THYMIDINE C₁₀ H₁₄ N₂ O₅ IQFYYKKMVGJFEH-XLPZGREQSA-N		Interactions Focus chain B [auth X]

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 11
Selection Criteria: structures with the lowest energy

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-09-11

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	82173707

Revision History (Full details and data files)

Version 1.0: 2024-09-11
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.