8W93

Azumapecten Farreri homopolymeric ferritin (ApF) mutant-H2KE

• PDB DOI: https://doi.org/10.2210/pdb8W93/pdb

• Classification: METAL BINDING PROTEIN
• Organism(s): Azumapecten farreri
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2023-09-04 Released: 2024-09-11 
• Deposition Author(s): Zhang, T., Jiao, R.
• Funding Organization(s): National Natural Science Foundation of China (NSFC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.09 Å
• R-Value Free: 0.202 
• R-Value Work: 0.178 
• R-Value Observed: 0.180 

Starting Model: experimental

Literature

Azumapecten Farreri homopolymeric ferritin (ApF) mutant-H2KE

Zhang, T., Jiao, R.

To be published.

Biological Assembly 1  

Global Symmetry: Octahedral - O  (Explore in 3D)
Global Stoichiometry: Homo 24-mer - A24 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 20.07 kDa 
• Atom Count: 1,585 
• Modelled Residue Count: 169 
• Deposited Residue Count: 171 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Ferritin	A [auth b]	171	Azumapecten farreri	Mutation(s): 2
UniProt
Find proteins for A0A173CSP7 (Azumapecten farreri) Explore A0A173CSP7  Go to UniProtKB:  A0A173CSP7

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
FE (Subject of Investigation/LOI)	B [auth b], C [auth b]	FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.09 Å
• R-Value Free: 0.202 
• R-Value Work: 0.178 
• R-Value Observed: 0.180 
• Space Group: I 4 3 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 152.679	α = 90
b = 152.679	β = 90
c = 152.679	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XDS	data scaling
MOLREP	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-09-11 
Deposition Author(s): Zhang, T., Jiao, R.

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Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	--

Revision History  

• Version 1.0: 2024-09-11
  Type: Initial release