8VLU

Cryo-EM structure of human HGSNAT bound with CoA

PDB DOI: https://doi.org/10.2210/pdb8VLU/pdb
EM Map EMD-43344: EMDB EMDataResource

Classification: MEMBRANE PROTEIN
Organism(s): Homo sapiens
Expression System: Homo sapiens
Mutation(s): No

Deposited: 2024-01-12 Released: 2024-06-26
Deposition Author(s): Li, F., Zhao, B.
Funding Organization(s): National Institutes of Health/National Institute of Mental Health (NIH/NIMH), Other private

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.12 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Structural and mechanistic insights into a lysosomal membrane enzyme HGSNAT involved in Sanfilippo syndrome

Li, F.

To be published.

Macromolecule Content

Total Structure Weight: 149.81 kDa
Atom Count: 8,596
Modelled Residue Count: 1,096
Deposited Residue Count: 1,326
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Heparan-alpha-glucosaminide N-acetyltransferase	A [auth B], B [auth A]	663	Homo sapiens	Mutation(s): 0 Gene Names: HGSNAT, TMEM76 EC: 2.3.1.78
UniProt & NIH Common Fund Data Resources
Find proteins for Q68CP4 (Homo sapiens) Explore Q68CP4 Go to UniProtKB: Q68CP4
PHAROS: Q68CP4 GTEx: ENSG00000165102
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q68CP4
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
COA (Subject of Investigation/LOI) Query on COA Download Ideal Coordinates CCD File SDF format, chain D [auth B] SDF format, chain J [auth A] MOL2 format, chain D [auth B] MOL2 format, chain J [auth A]	D [auth B], J [auth A]	COENZYME A C₂₁ H₃₆ N₇ O₁₆ P₃ S RGJOEKWQDUBAIZ-IBOSZNHHSA-N		Interactions Focus chain D [auth B] Focus chain J [auth A] Interactions & Density Focus chain D [auth B] Focus chain J [auth A]
NAG Query on NAG Download Ideal Coordinates CCD File SDF format, chain C [auth B] SDF format, chain E [auth B] SDF format, chain F [auth B] SDF format, chain G [auth A] SDF format, chain H [auth A] SDF format, chain I [auth A] SDF format, chain K [auth A] MOL2 format, chain C [auth B] MOL2 format, chain E [auth B] MOL2 format, chain F [auth B] MOL2 format, chain G [auth A] MOL2 format, chain H [auth A] MOL2 format, chain I [auth A] MOL2 format, chain K [auth A]	C [auth B] E [auth B] F [auth B] G [auth A] H [auth A] C [auth B], E [auth B], F [auth B], G [auth A], H [auth A], I [auth A], K [auth A]	2-acetamido-2-deoxy-beta-D-glucopyranose C₈ H₁₅ N O₆ OVRNDRQMDRJTHS-FMDGEEDCSA-N		Interactions Focus chain C [auth B] Focus chain E [auth B] Focus chain F [auth B] Focus chain G [auth A] Focus chain H [auth A] Focus chain I [auth A] Focus chain K [auth A] Interactions & Density Focus chain C [auth B] Focus chain E [auth B] Focus chain F [auth B] Focus chain G [auth A] Focus chain H [auth A] Focus chain I [auth A] Focus chain K [auth A]