8VLC

Crystal structure of Zn-dependent hydrolase from Salmonella typhimurium LT2

• PDB DOI: https://doi.org/10.2210/pdb8VLC/pdb

• Classification: HYDROLASE
• Organism(s): Salmonella enterica subsp. enterica serovar Typhimurium
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): Yes 


• Deposited: 2024-01-11 Released: 2024-07-10 
• Deposition Author(s): Chang, C., Maltseva, N., Endres, M., Joachimiak, A., Center for Structural Biology of Infectious Diseases, Center for Structural Biology of Infectious Diseases (CSBID)
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.80 Å
• R-Value Free: 0.216 
• R-Value Work: 0.189 
• R-Value Observed: 0.190 

Starting Model: experimental

Literature

Crystal structure of Zn-dependent hydrolase from Salmonella typhimurium LT2

Chang, C., Maltseva, N., Endres, M., Joachimiak, A.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 32.39 kDa 
• Atom Count: 2,301 
• Modelled Residue Count: 270 
• Deposited Residue Count: 293 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
HARLDQ motif MBL-fold protein	A	293	Salmonella enterica subsp. enterica serovar Typhimurium	Mutation(s): 2  Gene Names: G4J11_004745
UniProt
Find proteins for A0A734HI84 (Salmonella typhimurium) Explore A0A734HI84  Go to UniProtKB:  A0A734HI84

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
SO4	E [auth A]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L
EDO	B [auth A], C [auth A], D [auth A]	1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.80 Å
• R-Value Free: 0.216 
• R-Value Work: 0.189 
• R-Value Observed: 0.190 
• Space Group: P 6₂

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 121.002	α = 90
b = 121.002	β = 90
c = 35.367	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-3000	data scaling
HKL-3000	data reduction
HKL-3000	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-07-10 
Deposition Author(s): Chang, C., Maltseva, N., Endres, M., Joachimiak, A., Center for Structural Biology of Infectious Diseases, Center for Structural Biology of Infectious Diseases (CSBID)

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Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2024-07-10
  Type: Initial release