8VJW

Structure of Human Neurolysin in complex with angiotensin I peptide

  • Classification: HYDROLASE
  • Organism(s): Homo sapiens
  • Expression System: Escherichia coli
  • Mutation(s): No 

  • Deposited: 2024-01-08 Released: 2024-08-21 
  • Deposition Author(s): Shi, K., Aihara, H.
  • Funding Organization(s): National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS), National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.49 Å
  • R-Value Free: 0.286 
  • R-Value Work: 0.237 
  • R-Value Observed: 0.240 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history. 


Literature

Structural basis of divergent substrate recognition and inhibition of human neurolysin

Aihara, H.

To be published.

Macromolecules
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(by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Neurolysin, mitochondrial
A, B
667Homo sapiensMutation(s): 0 
Gene Names: NLN, AGTBP, KIAA1226
EC: 3.4.24.16
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BYT8 (Homo sapiens)
Explore Q9BYT8 
Go to UniProtKB:  Q9BYT8
PHAROS:  Q9BYT8
GTEx:  ENSG00000123213 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9BYT8
Sequence Annotations
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  • Reference Sequence

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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Angiotensin-1 peptide N-terminal end
C, E
4Homo sapiensMutation(s): 0 
Sequence Annotations
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  • Reference Sequence

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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Angiotensin-1 peptide C-terminal end
D, F
6Homo sapiensMutation(s): 0 
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN
Download Ideal Coordinates CCD File 
G [auth A],
H [auth B]		ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.49 Å
  • R-Value Free: 0.286 
  • R-Value Work: 0.237 
  • R-Value Observed: 0.240 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 101.078α = 90
b = 60.584β = 106.57
c = 147.759γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
STARANISOdata scaling
XDSdata reduction
PHASERphasing

Structure Validation

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Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS)United StatesR01NS106879
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR35GM118047

Revision History  (Full details and data files)

  • Version 1.0: 2024-08-21
    Type: Initial release