8VIS

Human TMPRSS11D complexed with a disulfide-linked autoinhibitory DDDDK peptide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.59 Å
  • R-Value Free: 0.187 
  • R-Value Work: 0.155 
  • R-Value Observed: 0.155 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural basis of TMPRSS11D specificity and autocleavage activation

Fraser, B.J.Wilson, R.P.Ilyassov, O.Lac, J.Dong, A.Li, Y.Y.Seitova, A.Li, Y.Hejazi, Z.Kenney, T.M.Penn, L.Z.Edwards, A.Morin, G.B.Benard, F.Arrowsmith, C.H.

(2024) bioRxiv 


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Transmembrane protease serine 11D non-catalytic chain
A, C, E, G
145Homo sapiensMutation(s): 5 
Gene Names: TMPRSS11DHAT
EC: 3.4.21
UniProt & NIH Common Fund Data Resources
Find proteins for O60235 (Homo sapiens)
Explore O60235 
Go to UniProtKB:  O60235
PHAROS:  O60235
GTEx:  ENSG00000153802 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO60235
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Transmembrane protease serine 11D catalytic chain
B, D, F, H
244Homo sapiensMutation(s): 0 
Gene Names: TMPRSS11DHAT
EC: 3.4.21
UniProt & NIH Common Fund Data Resources
Find proteins for O60235 (Homo sapiens)
Explore O60235 
Go to UniProtKB:  O60235
PHAROS:  O60235
GTEx:  ENSG00000153802 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO60235
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 4 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download Ideal Coordinates CCD File 
J [auth B],
L [auth D]
GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
EDO
Query on EDO

Download Ideal Coordinates CCD File 
K [auth B],
S [auth H]
1,2-ETHANEDIOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
MG
Query on MG

Download Ideal Coordinates CCD File 
I [auth A],
O [auth E],
Q [auth H]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
UNX
Query on UNX

Download Ideal Coordinates CCD File 
M [auth D],
N [auth D],
P [auth F],
R [auth H],
T [auth H]
UNKNOWN ATOM OR ION
X
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.59 Å
  • R-Value Free: 0.187 
  • R-Value Work: 0.155 
  • R-Value Observed: 0.155 
  • Space Group: P 43 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 119.676α = 90
b = 119.676β = 90
c = 134.289γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
HKL-3000data scaling
HKL-3000data reduction
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Canadian Institutes of Health Research (CIHR)CanadaFDN154328
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesP30 GM124165

Revision History  (Full details and data files)

  • Version 1.0: 2024-01-31
    Type: Initial release
  • Version 1.1: 2024-10-23
    Changes: Database references, Structure summary