8V73

Crystal structure of the core catalytic domain of human inositol phosphate multikinase in complex with compound 9


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.229 
  • R-Value Work: 0.160 
  • R-Value Observed: 0.164 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.0 of the entry. See complete history


Literature

Structure-based development of IPMK kinase inhibitors.

Wang, H.Shears, S.B.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Inositol polyphosphate multikinase261Homo sapiensMutation(s): 0 
Gene Names: IPMKIMPK
EC: 2.7.1.140 (PDB Primary Data), 2.7.1.151 (PDB Primary Data), 2.7.1.153 (PDB Primary Data)
UniProt & NIH Common Fund Data Resources
Find proteins for Q8NFU5 (Homo sapiens)
Explore Q8NFU5 
Go to UniProtKB:  Q8NFU5
PHAROS:  Q8NFU5
GTEx:  ENSG00000151151 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8NFU5
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
YIG (Subject of Investigation/LOI)
Query on YIG

Download Ideal Coordinates CCD File 
B [auth A](5P)-3-(4-phenoxyphenyl)-5-(1H-tetrazol-5-yl)-2,1-benzoxazole
C20 H13 N5 O2
RMVHXXZAXAMVLU-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.229 
  • R-Value Work: 0.160 
  • R-Value Observed: 0.164 
  • Space Group: P 42 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 77.808α = 90
b = 77.808β = 90
c = 84.899γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of Environmental Health Sciences (NIH/NIEHS)United States1ZIAES080046

Revision History  (Full details and data files)

  • Version 1.0: 2024-12-11
    Type: Initial release