8V5Y

Crystal structure of Tyr p 36.0101 in complex with a poly(L-proline) peptide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.06 Å
  • R-Value Free: 0.215 
  • R-Value Work: 0.169 

Starting Model: experimental
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Literature

Structural homology of mite profilins to plant profilins is not indicative of allergic cross-reactivity.

O'Malley, A.Sankaran, S.Carriuolo, A.Khatri, K.Kowal, K.Chruszcz, M.

(2024) Biol Chem 405: 367-381

  • DOI: https://doi.org/10.1515/hsz-2023-0366
  • Primary Citation of Related Structures:  
    8TI5, 8TI6, 8TI7, 8V5Y

  • PubMed Abstract: 

    Structural and allergenic characterization of mite profilins has not been previously pursued to a similar extent as plant profilins. Here, we describe structures of profilins originating from Tyrophagus putrescentiae (registered allergen Tyr p 36.0101) and Dermatophagoides pteronyssinus (here termed Der p profilin), which are the first structures of profilins from Arachnida. Additionally, the thermal stabilities of mite and plant profilins are compared, suggesting that the high number of cysteine residues in mite profilins may play a role in their increased stability. We also examine the cross-reactivity of plant and mite profilins as well as investigate the relevance of these profilins in mite inhalant allergy. Despite their high structural similarity to other profilins, mite profilins have low sequence identity with plant and human profilins. Subsequently, these mite profilins most likely do not display cross-reactivity with plant profilins. At the same time the profilins have highly conserved poly(l-proline) and actin binding sites.


  • Organizational Affiliation

    Department of Biochemistry and Molecular Biology, 3078 Michigan State University , 603 Wilson Road, East Lansing, MI 48824, USA.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
ProfilinA [auth B],
B [auth A]
155Tyrophagus putrescentiaeMutation(s): 0 
UniProt
Find proteins for A0A1B2YLJ4 (Tyrophagus putrescentiae)
Explore A0A1B2YLJ4 
Go to UniProtKB:  A0A1B2YLJ4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A1B2YLJ4
Sequence Annotations
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  • Reference Sequence

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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
poly(L-proline) peptide6synthetic constructMutation(s): 0 
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.06 Å
  • R-Value Free: 0.215 
  • R-Value Work: 0.169 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 88.289α = 90
b = 55.518β = 121.179
c = 59.032γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
HKL-3000data reduction
HKL-3000data scaling
MOLREPphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesR01AI077653

Revision History  (Full details and data files)

  • Version 1.0: 2024-05-08
    Type: Initial release
  • Version 1.1: 2024-06-19
    Changes: Database references