Tubulin code eraser CCP5 binds branch glutamates by substrate deformation
Chen, J., Zehr, E.A., Gruschus, J.M., Szyk, A., Liu, Y., Tanner, M.E., Tjandra, N., Roll-Mecak, A.(2024) Nature 
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
(2024) Nature 
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Cytosolic carboxypeptidase-like protein 5 | 524 | Homo sapiens | Mutation(s): 1  Gene Names: AGBL5, CCP5 EC: 3.4.17 (PDB Primary Data), 3.4.17.24 (PDB Primary Data) | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q8NDL9 (Homo sapiens) Explore Q8NDL9  Go to UniProtKB:  Q8NDL9 | |||||
PHAROS:  Q8NDL9 GTEx:  ENSG00000084693  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q8NDL9 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Tubulin beta-2A chain | B [auth I] | 15 | Homo sapiens | Mutation(s): 1  | ![]() |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q13885 (Homo sapiens) Explore Q13885  Go to UniProtKB:  Q13885 | |||||
GTEx:  ENSG00000137267  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q13885 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
MLT Query on MLT | D [auth A], E [auth A] | D-MALATE C4 H6 O5 BJEPYKJPYRNKOW-UWTATZPHSA-N | |||
ZN Query on ZN | C [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
K Query on K | F [auth A] | POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 65.429 | α = 90 |
b = 81.372 | β = 90 |
c = 104 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
XDS | data reduction |
Aimless | data scaling |
PHENIX | phasing |
Funding Organization | Location | Grant Number |
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National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS) | United States | 1ZIANS003163 |