8V3L | pdb_00008v3l

Microtubule inner proteins in the 48-nm doublet microtubule from the proximal region of Tetrahymena thermophila strain K40R

PDB DOI: https://doi.org/10.2210/pdb8V3L/pdb
EM Map EMD-42949: EMDB EMDataResource

Classification: STRUCTURAL PROTEIN
Organism(s): Tetrahymena thermophila
Mutation(s): No

Deposited: 2023-11-28 Released: 2024-05-01
Deposition Author(s): Legal, T., Bui, K.H.
Funding Organization(s): Canadian Institutes of Health Research (CIHR), Natural Sciences and Engineering Research Council (NSERC, Canada)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.30 Å
Aggregation State: CELL
Reconstruction Method: SINGLE PARTICLE

Starting Models: in silico
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wwPDB Validation 3D Report Full Report

Validation slider image for 8V3L

This is version 1.0 of the entry. See complete history.

Literature

48-nm doublet microtubule from the proximal region of Tetrahymena thermophila strain K40R

Bui, K.H.

To be published.

Macromolecule Content

Total Structure Weight: 207.88 kDa
Atom Count: 11,282
Modeled Residue Count: 1,359
Deposited Residue Count: 1,777
Unique protein chains: 2

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
CCDC81B	A	1,535	Tetrahymena thermophila	Mutation(s): 0
UniProt
Find proteins for I7M688 (Tetrahymena thermophila (strain SB210)) Explore I7M688 Go to UniProtKB: I7M688
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	I7M688
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
BMIP1	B [auth A1]	242	Tetrahymena thermophila	Mutation(s): 0
UniProt
Find proteins for I7MB72 (Tetrahymena thermophila (strain SB210)) Explore I7MB72 Go to UniProtKB: I7MB72
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	I7MB72
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 4.30 Å
Aggregation State: CELL
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX

Structure Validation

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View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2024-05-01

Deposition Author(s):

Funding Organization	Location	Grant Number
Canadian Institutes of Health Research (CIHR)	Canada	PJT-190195
Natural Sciences and Engineering Research Council (NSERC, Canada)	Canada	RGPIN-2022-04774

Revision History (Full details and data files)

Version 1.0: 2024-05-01
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.