Download MendeleyDioclea megacarpa lectin (DmegA) complexed with X-Man
Oliveira, M.V., De Sloover, G., Osterne, V.J.S., Pinto-Junior, V.R., Sacramento-Neto, J.C., Van Damme, E.J.M., Nascimento, K.S., Cavada, B.S.To be published.
8UX7
Dioclea megacarpa lectin (DmegA) complexed with X-Man
- PDB DOI: https://doi.org/10.2210/pdb8UX7/pdb
- Classification: SUGAR BINDING PROTEIN
- Organism(s): Macropsychanthus megacarpus
- Mutation(s): No
- Deposited: 2023-11-09 Released: 2023-11-29
- Funding Organization(s): Coordination for the Improvement of Higher Education Personnel, Brazilian National Council for Scientific and Technological Development (CNPq), Research Foundation - Flanders (FWO)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.248
- R-Value Work: 0.201
Starting Model: experimental
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This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Dioclea megacarpa lectin | 237 | Macropsychanthus megacarpus | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for B3EWJ2 (Macropsychanthus sclerocarpus) Explore B3EWJ2 Go to UniProtKB: B3EWJ2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | B3EWJ2 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 5 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| XMM (Subject of Investigation/LOI) Query on XMM | E [auth A], I [auth B] | 5-bromo-4-chloro-1H-indol-3-yl alpha-D-mannopyranoside C14 H15 Br Cl N O6 OPIFSICVWOWJMJ-HAAGFXOZSA-N |  | ||
| GOL Query on GOL | F [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| MN (Subject of Investigation/LOI) Query on MN | C [auth A], G [auth B] | MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N |  | ||
| CA (Subject of Investigation/LOI) Query on CA | D [auth A], H [auth B] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
| K Query on K | J [auth B] | POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.248
- R-Value Work: 0.201
- Space Group: I 2 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 89.35 | α = 90 |
| b = 109.414 | β = 90 |
| c = 126.364 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| MOSFLM | data reduction |
| SCALA | data scaling |
| MOLREP | phasing |
| Coot | model building |
Entry History & Funding Information
Deposition Data
- Released Date: 2023-11-29 Deposition Author(s): Oliveira, M.V., De Sloover, G., Osterne, V.J.S., Pinto-Junior, V.R., Sacramento-Neto, J.C., Van Damme, E.J.M., Nascimento, K.S., Cavada, B.S.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Coordination for the Improvement of Higher Education Personnel | Brazil | -- |
| Brazilian National Council for Scientific and Technological Development (CNPq) | Brazil | -- |
| Research Foundation - Flanders (FWO) | Belgium | 12T4622N |
Revision History (Full details and data files)
- Version 1.0: 2023-11-29
Type: Initial release
