8UWS | pdb_00008uws

Cryo-EM structure of an Enterobacter GH43 Beta-Xylosidase: EcXyl43

PDB DOI: https://doi.org/10.2210/pdb8UWS/pdb
EM Map EMD-42680: EMDB EMDataResource

Classification: HYDROLASE
Organism(s): Enterobacter hormaechei
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2023-11-08 Released: 2024-05-15
Deposition Author(s): Briganti, L., Godoy, A.S., Capetti, C.C.M., Portugal, R.V., Polikarpov, I.
Funding Organization(s): Sao Paulo Research Foundation (FAPESP)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.65 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 8UWS

This is version 1.1 of the entry. See complete history.

Literature

Cryo-EM structure of an Enterobacter GH43 Beta-Xylosidase: EcXyl43

Briganti, L., Godoy, A.S., Polikarpov, I.

To be published.

Macromolecule Content

Total Structure Weight: 244.16 kDa
Atom Count: 17,137
Modeled Residue Count: 2,133
Deposited Residue Count: 2,144
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Beta-xylosidase	A [auth C], B [auth D], C [auth A], D [auth B]	536	Enterobacter hormaechei	Mutation(s): 0 Gene Names: FJMB80377_06160
UniProt
Find proteins for A0AAT8XUI4 (Enterobacter hormaechei) Explore A0AAT8XUI4 Go to UniProtKB: A0AAT8XUI4
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0AAT8XUI4
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
CA Query on CA Download:Ideal Coordinates CCD File SDF format, chain H [auth B] SDF format, chain G [auth A] SDF format, chain F [auth D] SDF format, chain E [auth C] MOL2 format, chain H [auth B] MOL2 format, chain G [auth A] MOL2 format, chain F [auth D] MOL2 format, chain E [auth C] mmCIF format, chain H [auth B] mmCIF format, chain G [auth A] mmCIF format, chain F [auth D] mmCIF format, chain E [auth C]	E [auth C], F [auth D], G [auth A], H [auth B]	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N		Interactions Focus chain E [auth C] Focus chain F [auth D] Focus chain G [auth A] Focus chain H [auth B] Interactions & Density Focus chain E [auth C] Focus chain F [auth D] Focus chain G [auth A] Focus chain H [auth B]

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 2.65 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2024-05-15

Deposition Author(s):

Capetti, C.C.M.

Funding Organization	Location	Grant Number
Sao Paulo Research Foundation (FAPESP)	Brazil	--

Revision History (Full details and data files)

Version 1.0: 2024-05-15
Type: Initial release
Version 1.1: 2025-05-21
Changes: Data collection, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.