8UW6

Acetylornithine deacetylase from Escherichia coli, di-zinc form.

PDB DOI: https://doi.org/10.2210/pdb8UW6/pdb

Classification: HYDROLASE
Organism(s): Escherichia coli str. K-12 substr. MG1655
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2023-11-06 Released: 2024-05-29
Deposition Author(s): Osipiuk, J., Endres, M., Kelley, E., Becker, D.P., Joachimiak, A., Center for Structural Biology of Infectious Diseases (CSBID)
Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free: 0.203
R-Value Work: 0.163
R-Value Observed: 0.165

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Acetylornithine deacetylase from Escherichia coli, di-zinc form.

Osipiuk, J., Endres, M., Kelley, E., Becker, D.P., Joachimiak, A., Center for Structural Biology of Infectious Diseases (CSBID)

To be published.

Macromolecule Content

Total Structure Weight: 172.95 kDa
Atom Count: 13,422
Modelled Residue Count: 1,522
Deposited Residue Count: 1,544
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Acetylornithine deacetylase	A, B, C, D	386	Escherichia coli str. K-12 substr. MG1655	Mutation(s): 0 Gene Names: argE, Z5515, ECs4886 EC: 3.5.1.16
UniProt
Find proteins for Q8X742 (Escherichia coli O157:H7) Explore Q8X742 Go to UniProtKB: Q8X742
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q8X742
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
TRS Query on TRS Download Ideal Coordinates CCD File SDF format, chain Z [auth D] SDF format, chain AA [auth D] SDF format, chain I [auth A] SDF format, chain O [auth B] SDF format, chain P [auth B] SDF format, chain T [auth C] MOL2 format, chain Z [auth D] MOL2 format, chain AA [auth D] MOL2 format, chain I [auth A] MOL2 format, chain O [auth B] MOL2 format, chain P [auth B] MOL2 format, chain T [auth C]	AA [auth D] I [auth A] O [auth B] P [auth B] T [auth C] AA [auth D], I [auth A], O [auth B], P [auth B], T [auth C], Z [auth D]	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL C₄ H₁₂ N O₃ LENZDBCJOHFCAS-UHFFFAOYSA-O		Interactions Focus chain AA [auth D] Focus chain I [auth A] Focus chain O [auth B] Focus chain P [auth B] Focus chain T [auth C] Focus chain Z [auth D] Interactions & Density Focus chain AA [auth D] Focus chain I [auth A] Focus chain O [auth B] Focus chain P [auth B] Focus chain T [auth C] Focus chain Z [auth D]
SO4 Query on SO4 Download Ideal Coordinates CCD File SDF format, chain G [auth A] SDF format, chain H [auth A] SDF format, chain K [auth A] SDF format, chain S [auth C] SDF format, chain V [auth C] MOL2 format, chain G [auth A] MOL2 format, chain H [auth A] MOL2 format, chain K [auth A] MOL2 format, chain S [auth C] MOL2 format, chain V [auth C]	G [auth A], H [auth A], K [auth A], S [auth C], V [auth C]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain G [auth A] Focus chain H [auth A] Focus chain K [auth A] Focus chain S [auth C] Focus chain V [auth C] Interactions & Density Focus chain G [auth A] Focus chain H [auth A] Focus chain K [auth A] Focus chain S [auth C] Focus chain V [auth C]
ZN (Subject of Investigation/LOI) Query on ZN Download Ideal Coordinates CCD File SDF format, chain L [auth B] SDF format, chain E [auth A] SDF format, chain F [auth A] SDF format, chain M [auth B] SDF format, chain N [auth B] SDF format, chain Q [auth C] SDF format, chain R [auth C] SDF format, chain W [auth D] SDF format, chain X [auth D] SDF format, chain Y [auth D] MOL2 format, chain L [auth B] MOL2 format, chain E [auth A] MOL2 format, chain F [auth A] MOL2 format, chain M [auth B] MOL2 format, chain N [auth B] MOL2 format, chain Q [auth C] MOL2 format, chain R [auth C] MOL2 format, chain W [auth D] MOL2 format, chain X [auth D] MOL2 format, chain Y [auth D]	E [auth A] F [auth A] L [auth B] M [auth B] N [auth B] E [auth A], F [auth A], L [auth B], M [auth B], N [auth B], Q [auth C], R [auth C], W [auth D], X [auth D], Y [auth D]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain E [auth A] Focus chain F [auth A] Focus chain L [auth B] Focus chain M [auth B] Focus chain N [auth B] Focus chain Q [auth C] Focus chain R [auth C] Focus chain W [auth D] Focus chain X [auth D] Focus chain Y [auth D] Interactions & Density Focus chain E [auth A] Focus chain F [auth A] Focus chain L [auth B] Focus chain M [auth B] Focus chain N [auth B] Focus chain Q [auth C] Focus chain R [auth C] Focus chain W [auth D] Focus chain X [auth D] Focus chain Y [auth D]
EDO Query on EDO Download Ideal Coordinates CCD File SDF format, chain J [auth A] SDF format, chain U [auth C] MOL2 format, chain J [auth A] MOL2 format, chain U [auth C]	J [auth A], U [auth C]	1,2-ETHANEDIOL C₂ H₆ O₂ LYCAIKOWRPUZTN-UHFFFAOYSA-N		Interactions Focus chain J [auth A] Focus chain U [auth C] Interactions & Density Focus chain J [auth A] Focus chain U [auth C]