8UVW | pdb_00008uvw

Crystal structure of RAD51-BRCA2 Cter complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.73 Å
  • R-Value Free: 
    0.282 (Depositor), 0.262 (DCC) 
  • R-Value Work: 
    0.248 (Depositor), 0.250 (DCC) 
  • R-Value Observed: 
    0.250 (Depositor) 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 8UVW

Ligand Structure Quality Assessment 


This is version 1.1 of the entry. See complete history

Literature

BRCA2 C-terminal clamp restructures RAD51 dimers to bind B-DNA for replication fork stability.

Longo, M.A.Ahmed, S.M.Chen, Y.Tsai, C.L.Namjoshi, S.Shen, R.Ahmed, Z.Wang, X.Perera, R.L.Arvai, A.Lee, M.Kong, L.R.Engl, W.Ng, W.S.Zhao, Z.W.Venkitaraman, A.R.Tainer, J.A.Schlacher, K.

(2025) Mol Cell 85: 2080-2096.e6

  • DOI: https://doi.org/10.1016/j.molcel.2025.05.010
  • Primary Citation Related Structures: 
    8UVW

  • PubMed Abstract: 

    Tumor suppressor protein breast cancer susceptibility protein 2 (BRCA2) acts with RAD51 in replication fork protection (FP) and homology-directed DNA-break repair (HDR). Critical for cancer etiology and therapy resistance, the BRCA2 C terminus was thought to stabilize recombinogenic RAD51 after the assembly of ATP-extended RAD51 filaments on single-stranded DNA (ssDNA). Here, the detailed crystal structure of the human BRCA2 C-terminal interaction domain (TR2 interface [TR2i]) complexed with ATP-bound RAD51 prior to DNA binding instead reveals TR2i unexpectedly induces a unique ATP-RAD51 dimer conformation that accommodates nucleation onto double-stranded B-DNA unsuited for HDR initiation. Structural, biochemical, and molecular results with interface-guided mutations uncover TR2i's FP mechanism. Proline-driven secondary structure stabilizes residue triads and spans the RAD51 dimer, engaging pivotal interactions of RAD51 M210 and BRCA2 S3291/P3292, the cyclin-dependent kinase (CDK) phosphorylation site that toggles between FP during S phase and HDR in G2. TR2i evidently acts as an allosteric clamp, switching RAD51 from ssDNA to double-stranded and B-DNA binding, enforcing FP over HDR, challenging the current BRCA2-RAD51 dogma.


  • Organizational Affiliation
    • Department of Molecular & Cellular Oncology, UT MD Anderson Cancer Center, Houston, TX 77030, USA.

Macromolecule Content 

  • Total Structure Weight: 64.54 kDa 
  • Atom Count: 4,049 
  • Modeled Residue Count: 510 
  • Deposited Residue Count: 586 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Breast cancer type 2 susceptibility protein, DNA repair protein RAD51 homolog 1 fusionA [auth B]297Homo sapiensMutation(s): 1 
Gene Names: BRCA2FACDFANCD1RAD51RAD51ARECA
EC: 3.6.4
UniProt & NIH Common Fund Data Resources
Find proteins for P51587 (Homo sapiens)
Explore P51587 
Go to UniProtKB:  P51587
PHAROS:  P51587
GTEx:  ENSG00000139618 
Find proteins for Q06609 (Homo sapiens)
Explore Q06609 
Go to UniProtKB:  Q06609
PHAROS:  Q06609
GTEx:  ENSG00000051180 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupsQ06609P51587
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
DNA repair protein RAD51 homolog 1,Breast cancer type 2 susceptibility proteinB [auth D]289Homo sapiensMutation(s): 5 
Gene Names: RAD51BRCA2FACDFANCD1
EC: 3.6.4
UniProt & NIH Common Fund Data Resources
Find proteins for P51587 (Homo sapiens)
Explore P51587 
Go to UniProtKB:  P51587
PHAROS:  P51587
GTEx:  ENSG00000139618 
Find proteins for Q06609 (Homo sapiens)
Explore Q06609 
Go to UniProtKB:  Q06609
PHAROS:  Q06609
GTEx:  ENSG00000051180 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupsQ06609P51587
Sequence Annotations
Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ADP
(Subject of Investigation/LOI)

Query on ADP



Download:Ideal Coordinates CCD File
C [auth B],
G [auth D]
ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
BEF
(Subject of Investigation/LOI)

Query on BEF



Download:Ideal Coordinates CCD File
D [auth B],
H [auth D]
BERYLLIUM TRIFLUORIDE ION
Be F3
OGIAHMCCNXDTIE-UHFFFAOYSA-K
EDO

Query on EDO



Download:Ideal Coordinates CCD File
E [auth B],
F [auth B]
1,2-ETHANEDIOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.73 Å
  • R-Value Free:  0.282 (Depositor), 0.262 (DCC) 
  • R-Value Work:  0.248 (Depositor), 0.250 (DCC) 
  • R-Value Observed: 0.250 (Depositor) 
Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 51.463α = 90
b = 98.551β = 90
c = 128.324γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Cancer Institute (NIH/NCI)United StatesR35CA220430
Cancer Prevention and Research Institute of Texas (CPRIT)United StatesRP180813
National Institutes of Health/National Cancer Institute (NIH/NCI)United StatesF31CA142313

Revision History  (Full details and data files)

  • Version 1.0: 2024-11-06
    Type: Initial release
  • Version 1.1: 2025-10-01
    Changes: Database references